Analysis of interatomic Contacts of Structural Units in PDB entry:
7JM6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7JM6 entry

There are 2 chains in PDB entry 7JM6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 85ARG 787
B
 LEU 85ARG 787
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 7JM6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
99 112Right-handed alpha
Helix 2
AA2
A
115 165Right-handed alpha
Helix 3
AA3
A
166 193Right-handed alpha
Helix 4
AA4
A
194 197Right-handed 310
Helix 5
AA5
A
200 210Right-handed alpha
Helix 6
AA6
A
218 235Right-handed alpha
Helix 7
AA7
A
242 259Right-handed alpha
Helix 8
AA8
A
276 297Right-handed alpha
Helix 9
AA9
A
298 311Right-handed alpha
Helix 10
AB1
A
315 342Right-handed alpha
Helix 11
AB2
A
368 402Right-handed alpha
Helix 12
AB3
A
404 431Right-handed alpha
Helix 13
AB4
A
464 475Right-handed alpha
Helix 14
AB5
A
481 498Right-handed alpha
Helix 15
AB6
A
508 531Right-handed alpha
Helix 16
AB7
A
538 555Right-handed alpha
Helix 17
AB8
A
558 570Right-handed alpha
Helix 18
AB9
A
574 593Right-handed alpha
Helix 19
AC1
A
595 605Right-handed alpha
Helix 20
AC2
A
621 626Right-handed alpha
Helix 21
AC3
A
639 648Right-handed alpha
Helix 22
AC4
A
677 686Right-handed alpha
Helix 23
AC5
A
703 711Right-handed alpha
Helix 24
AC6
A
723 728Right-handed alpha
Helix 25
AC7
A
749 760Right-handed alpha
Helix 26
AC8
A
779 785Right-handed alpha
Helix 27
AC9
B
99 112Right-handed alpha
Helix 28
AD1
B
115 165Right-handed alpha
Helix 29
AD2
B
166 193Right-handed alpha
Helix 30
AD3
B
194 197Right-handed 310
Helix 31
AD4
B
200 210Right-handed alpha
Helix 32
AD5
B
218 235Right-handed alpha
Helix 33
AD6
B
242 259Right-handed alpha
Helix 34
AD7
B
276 297Right-handed alpha
Helix 35
AD8
B
298 311Right-handed alpha
Helix 36
AD9
B
315 342Right-handed alpha
Helix 37
AE1
B
368 402Right-handed alpha
Helix 38
AE2
B
404 431Right-handed alpha
Helix 39
AE3
B
464 475Right-handed alpha
Helix 40
AE4
B
481 498Right-handed alpha
Helix 41
AE5
B
508 531Right-handed alpha
Helix 42
AE6
B
538 555Right-handed alpha
Helix 43
AE7
B
558 570Right-handed alpha
Helix 44
AE8
B
574 593Right-handed alpha
Helix 45
AE9
B
595 605Right-handed alpha
Helix 46
AF1
B
621 626Right-handed alpha
Helix 47
AF2
B
639 648Right-handed alpha
Helix 48
AF3
B
677 686Right-handed alpha
Helix 49
AF4
B
703 711Right-handed alpha
Helix 50
AF5
B
723 728Right-handed alpha
Helix 51
AF6
B
749 760Right-handed alpha
Helix 52
AF7
B
779 785Right-handed alpha
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There are 10 sheets in PDB entry 7JM6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 91first strand
Strand 2
A
211 212anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
260 261first strand
Strand 2
A
266 267anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
633 634first strand
Strand 2
A
655 659parallel
Strand 3
A
671 676anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
636 638first strand
Strand 2
A
730 732anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
743 745first strand
Strand 2
A
765 768parallel
Strand 3
A
774 778anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
90 91first strand
Strand 2
B
211 212anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
260 261first strand
Strand 2
B
266 267anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
633 634first strand
Strand 2
B
655 659parallel
Strand 3
B
671 676anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
636 638first strand
Strand 2
B
730 732anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
743 745first strand
Strand 2
B
765 768parallel
Strand 3
B
774 778anti-parallel
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