Analysis of interatomic Contacts of Structural Units in PDB entry:
7JM7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7JM7 entry

There are 4 chains in PDB entry 7JM7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 LEU 73LYS 310
A
 SER 91ARG 791
D
 LEU 73LYS 310
C
 SER 91ARG 791
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 76 helices in PDB entry 7JM7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
81 105Right-handed alpha
Helix 2
AA2
B
110 131Right-handed alpha
Helix 3
AA3
B
142 147Right-handed alpha
Helix 4
AA4
B
153 168Right-handed alpha
Helix 5
AA5
B
169 174Right-handed 310
Helix 6
AA6
B
183 205Right-handed alpha
Helix 7
AA7
B
218 247Right-handed alpha
Helix 8
AA8
B
255 271Right-handed alpha
Helix 9
AA9
B
281 310Right-handed alpha
Helix 10
AB1
A
104 116Right-handed alpha
Helix 11
AB2
A
121 170Right-handed alpha
Helix 12
AB3
A
172 198Right-handed alpha
Helix 13
AB4
A
199 202Right-handed 310
Helix 14
AB5
A
205 215Right-handed alpha
Helix 15
AB6
A
223 240Right-handed alpha
Helix 16
AB7
A
247 262Right-handed alpha
Helix 17
AB8
A
281 302Right-handed alpha
Helix 18
AB9
A
303 316Right-handed alpha
Helix 19
AC1
A
320 347Right-handed alpha
Helix 20
AC2
A
371 373Right-handed 310
Helix 21
AC3
A
374 406Right-handed alpha
Helix 22
AC4
A
409 435Right-handed alpha
Helix 23
AC5
A
461 467Right-handed alpha
Helix 24
AC6
A
469 479Right-handed alpha
Helix 25
AC7
A
486 505Right-handed alpha
Helix 26
AC8
A
513 536Right-handed alpha
Helix 27
AC9
A
543 560Right-handed alpha
Helix 28
AD1
A
563 575Right-handed alpha
Helix 29
AD2
A
579 598Right-handed alpha
Helix 30
AD3
A
600 609Right-handed alpha
Helix 31
AD4
A
619 624Right-handed 310
Helix 32
AD5
A
626 631Right-handed alpha
Helix 33
AD6
A
644 653Right-handed alpha
Helix 34
AD7
A
681 690Right-handed alpha
Helix 35
AD8
A
707 714Right-handed alpha
Helix 36
AD9
A
727 732Right-handed alpha
Helix 37
AE1
A
753 765Right-handed alpha
Helix 38
AE2
A
783 789Right-handed alpha
Helix 39
AE3
D
81 105Right-handed alpha
Helix 40
AE4
D
110 131Right-handed alpha
Helix 41
AE5
D
142 147Right-handed alpha
Helix 42
AE6
D
153 168Right-handed alpha
Helix 43
AE7
D
169 174Right-handed 310
Helix 44
AE8
D
183 205Right-handed alpha
Helix 45
AE9
D
218 247Right-handed alpha
Helix 46
AF1
D
255 271Right-handed alpha
Helix 47
AF2
D
281 310Right-handed alpha
Helix 48
AF3
C
104 116Right-handed alpha
Helix 49
AF4
C
121 170Right-handed alpha
Helix 50
AF5
C
172 198Right-handed alpha
Helix 51
AF6
C
199 202Right-handed 310
Helix 52
AF7
C
205 215Right-handed alpha
Helix 53
AF8
C
223 240Right-handed alpha
Helix 54
AF9
C
247 262Right-handed alpha
Helix 55
AG1
C
281 302Right-handed alpha
Helix 56
AG2
C
303 316Right-handed alpha
Helix 57
AG3
C
320 347Right-handed alpha
Helix 58
AG4
C
371 373Right-handed 310
Helix 59
AG5
C
374 406Right-handed alpha
Helix 60
AG6
C
409 435Right-handed alpha
Helix 61
AG7
C
461 467Right-handed alpha
Helix 62
AG8
C
469 479Right-handed alpha
Helix 63
AG9
C
486 505Right-handed alpha
Helix 64
AH1
C
513 536Right-handed alpha
Helix 65
AH2
C
543 560Right-handed alpha
Helix 66
AH3
C
563 575Right-handed alpha
Helix 67
AH4
C
579 598Right-handed alpha
Helix 68
AH5
C
600 609Right-handed alpha
Helix 69
AH6
C
619 624Right-handed 310
Helix 70
AH7
C
626 631Right-handed alpha
Helix 71
AH8
C
644 653Right-handed alpha
Helix 72
AH9
C
681 690Right-handed alpha
Helix 73
AI1
C
707 714Right-handed alpha
Helix 74
AI2
C
727 732Right-handed alpha
Helix 75
AI3
C
753 765Right-handed alpha
Helix 76
AI4
C
783 789Right-handed alpha
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There are 12 sheets in PDB entry 7JM7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 96first strand
Strand 2
A
216 217anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
265 266first strand
Strand 2
A
271 272anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
438 440first strand
Strand 2
A
458 460anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
638 639first strand
Strand 2
A
660 664parallel
Strand 3
A
675 680anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
641 643first strand
Strand 2
A
734 736anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
747 749first strand
Strand 2
A
769 772parallel
Strand 3
A
778 782anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
95 96first strand
Strand 2
C
216 217anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
265 266first strand
Strand 2
C
271 272anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
438 440first strand
Strand 2
C
458 460anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
638 639first strand
Strand 2
C
660 664parallel
Strand 3
C
675 680anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
641 643first strand
Strand 2
C
734 736anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
747 749first strand
Strand 2
C
769 772parallel
Strand 3
C
778 782anti-parallel
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