Analysis of interatomic Contacts of Structural Units in PDB entry:
7JMB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7JMB entry

There are 2 chains in PDB entry 7JMB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 16ASP 277
B
 HIS 16ASP 277
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 7JMB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 26Right-handed 310
Helix 2
AA2
A
64 76Right-handed alpha
Helix 3
AA3
A
95 107Right-handed alpha
Helix 4
AA4
A
122 133Right-handed alpha
Helix 5
AA5
A
146 151Right-handed alpha
Helix 6
AA6
A
166 188Right-handed alpha
Helix 7
AA7
A
205 217Right-handed alpha
Helix 8
AA8
A
241 252Right-handed alpha
Helix 9
AA9
B
22 26Right-handed 310
Helix 10
AB1
B
64 76Right-handed alpha
Helix 11
AB2
B
91 94Right-handed 310
Helix 12
AB3
B
95 107Right-handed alpha
Helix 13
AB4
B
122 133Right-handed alpha
Helix 14
AB5
B
146 151Right-handed alpha
Helix 15
AB6
B
166 188Right-handed alpha
Helix 16
AB7
B
205 217Right-handed alpha
Helix 17
AB8
B
241 252Right-handed alpha
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There are 4 sheets in PDB entry 7JMB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
256 257first strand
Strand 2
A
220 225parallel
Strand 3
A
190 197parallel
Strand 4
A
137 141parallel
Strand 5
A
113 118parallel
Strand 6
A
83 86parallel
Strand 7
A
29 31parallel
Strand 8
A
268 269anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 42first strand
Strand 2
A
154 159anti-parallel
Strand 3
A
162 164anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
256 257first strand
Strand 2
B
220 225parallel
Strand 3
B
190 197parallel
Strand 4
B
137 141parallel
Strand 5
B
113 118parallel
Strand 6
B
83 86parallel
Strand 7
B
29 31parallel
Strand 8
B
268 270anti-parallel
Strand 9
B
273 275anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
157 158first strand
Strand 2
B
163 164anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il