Analysis of interatomic Contacts of Structural Units in PDB entry:
7JMN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7JMN entry

There are 5 chains in PDB entry 7JMN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
E	ARG 60	SER 893
N	LEU 799	GLU 1013
P	ARG 71	ARG 969
O	GLN 88	LEU 320
X	UNK 53	UNK 104

There are 63 helices in PDB entry 7JMN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	E	69	82	Right-handed alpha
Helix 2	AA2	E	219	230	Right-handed alpha
Helix 3	AA3	E	237	249	Right-handed alpha
Helix 4	AA4	E	315	324	Right-handed alpha
Helix 5	AA5	E	332	337	Right-handed alpha
Helix 6	AA6	E	352	361	Right-handed alpha
Helix 7	AA7	E	379	391	Right-handed alpha
Helix 8	AA8	E	397	405	Right-handed 310
Helix 9	AA9	E	441	446	Right-handed alpha
Helix 10	AB1	E	478	482	Right-handed 310
Helix 11	AB2	E	505	510	Right-handed alpha
Helix 12	AB3	E	515	524	Right-handed alpha
Helix 13	AB4	E	525	528	Right-handed 310
Helix 14	AB5	E	529	536	Right-handed alpha
Helix 15	AB6	E	537	541	Right-handed 310
Helix 16	AB7	E	542	550	Right-handed alpha
Helix 17	AB8	E	563	583	Right-handed alpha
Helix 18	AB9	E	606	613	Right-handed 310
Helix 19	AC1	E	655	668	Right-handed alpha
Helix 20	AC2	E	672	681	Right-handed alpha
Helix 21	AC3	E	688	690	Right-handed 310
Helix 22	AC4	E	691	699	Right-handed alpha
Helix 23	AC5	E	707	718	Right-handed alpha
Helix 24	AC6	E	718	723	Right-handed alpha
Helix 25	AC7	E	728	757	Right-handed alpha
Helix 26	AC8	E	763	769	Right-handed alpha
Helix 27	AC9	E	784	789	Right-handed alpha
Helix 28	AD1	E	843	851	Right-handed alpha
Helix 29	AD2	E	852	867	Right-handed alpha
Helix 30	AD3	E	874	882	Right-handed alpha
Helix 31	AD4	N	800	813	Right-handed alpha
Helix 32	AD5	N	814	819	Right-handed alpha
Helix 33	AD6	N	876	880	Right-handed 310
Helix 34	AD7	N	882	889	Right-handed alpha
Helix 35	AD8	N	896	914	Right-handed alpha
Helix 36	AD9	N	914	920	Right-handed alpha
Helix 37	AE1	N	978	983	Right-handed alpha
Helix 38	AE2	N	995	1012	Right-handed alpha
Helix 39	AE3	P	210	213	Right-handed 310
Helix 40	AE4	P	563	568	Right-handed 310
Helix 41	AE5	P	569	575	Right-handed alpha
Helix 42	AE6	P	607	615	Right-handed alpha
Helix 43	AE7	P	637	641	Right-handed 310
Helix 44	AE8	P	654	672	Right-handed alpha
Helix 45	AE9	P	699	726	Right-handed alpha
Helix 46	AF1	P	742	751	Right-handed alpha
Helix 47	AF2	P	763	790	Right-handed alpha
Helix 48	AF3	P	827	838	Right-handed alpha
Helix 49	AF4	P	850	868	Right-handed alpha
Helix 50	AF5	P	890	899	Right-handed alpha
Helix 51	AF6	P	923	927	Right-handed 310
Helix 52	AF7	P	937	942	Right-handed 310
Helix 53	AF8	P	948	952	Right-handed 310
Helix 54	AF9	O	89	104	Right-handed alpha
Helix 55	AG1	O	105	111	Right-handed alpha
Helix 56	AG2	O	134	147	Right-handed alpha
Helix 57	AG3	O	148	159	Right-handed alpha
Helix 58	AG4	O	165	170	Right-handed alpha
Helix 59	AG5	O	252	259	Right-handed alpha
Helix 60	AG6	O	262	270	Right-handed alpha
Helix 61	AG7	O	280	284	Right-handed 310
Helix 62	AG8	O	287	311	Right-handed alpha
Helix 63	AG9	X	83	87	Right-handed 310

There are 13 sheets in PDB entry 7JMN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	852	854	first strand
Strand 2	N	868	870	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	924	927	first strand
Strand 2	N	935	940	anti-parallel
Strand 3	N	947	952	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	962	963	first strand
Strand 2	N	991	992	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	93	97	first strand
Strand 2	P	102	107	anti-parallel
Strand 3	P	128	131	anti-parallel
Strand 4	P	150	152	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	158	163	first strand
Strand 2	P	173	177	anti-parallel
Strand 3	P	183	187	anti-parallel
Strand 4	P	196	199	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	215	217	first strand
Strand 2	P	259	261	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	227	232	first strand
Strand 2	P	241	246	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	299	305	first strand
Strand 2	P	308	314	anti-parallel
Strand 3	P	320	325	anti-parallel
Strand 4	P	363	367	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	395	396	first strand
Strand 2	P	410	411	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	438	442	first strand
Strand 2	P	450	454	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	527	530	first strand
Strand 2	P	536	540	anti-parallel
Strand 3	P	549	550	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	956	958	first strand
Strand 2	P	965	967	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	66	68	first strand
Strand 2	X	99	101	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7JMN

Analysis of interatomic Contacts of Structural Units in PDB entry:
7JMN