Analysis of interatomic Contacts of Structural Units in PDB entry:
7JN4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7JN4 entry

There are 24 chains in PDB entry 7JN4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 18	VAL 255
A	ALA 257	VAL 461
B	MET 1	ARG 138
C	LYS 18	VAL 255
C	ALA 257	VAL 461
D	MET 1	ARG 138
E	LYS 18	VAL 255
E	ALA 257	VAL 461
F	MET 1	ARG 138
G	LYS 18	VAL 255
G	ALA 257	VAL 461
H	MET 1	ARG 138
I	LYS 18	VAL 255
I	ALA 257	VAL 461
J	MET 1	ARG 138
K	LYS 18	VAL 255
K	ALA 257	VAL 461
L	MET 1	ARG 138
M	LYS 18	VAL 255
M	ALA 257	VAL 461
N	MET 1	ARG 138
O	LYS 18	VAL 255
O	ALA 257	VAL 461
P	MET 1	ARG 138

There are184 helices in PDB entry 7JN4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	49	60	Right-handed alpha
Helix 2	AA2	A	104	108	Right-handed 310
Helix 3	AA3	A	112	121	Right-handed alpha
Helix 4	AA4	A	123	127	Right-handed 310
Helix 5	AA5	A	141	146	Right-handed alpha
Helix 6	AA6	A	154	163	Right-handed alpha
Helix 7	AA7	A	181	196	Right-handed alpha
Helix 8	AA8	A	213	233	Right-handed alpha
Helix 9	AA9	A	246	261	Right-handed alpha
Helix 10	AB1	A	269	273	Right-handed alpha
Helix 11	AB2	A	273	287	Right-handed alpha
Helix 12	AB3	A	297	303	Right-handed alpha
Helix 13	AB4	A	310	322	Right-handed alpha
Helix 14	AB5	A	337	351	Right-handed alpha
Helix 15	AB6	A	357	361	Right-handed 310
Helix 16	AB7	A	383	385	Right-handed 310
Helix 17	AB8	A	386	395	Right-handed alpha
Helix 18	AB9	A	413	433	Right-handed alpha
Helix 19	AC1	A	440	452	Right-handed alpha
Helix 20	AC2	A	452	460	Right-handed alpha
Helix 21	AC3	B	22	36	Right-handed alpha
Helix 22	AC4	B	54	60	Right-handed 310
Helix 23	AC5	B	85	100	Right-handed alpha
Helix 24	AC6	C	49	60	Right-handed alpha
Helix 25	AC7	C	104	108	Right-handed 310
Helix 26	AC8	C	112	121	Right-handed alpha
Helix 27	AC9	C	123	127	Right-handed 310
Helix 28	AD1	C	141	146	Right-handed alpha
Helix 29	AD2	C	154	163	Right-handed alpha
Helix 30	AD3	C	181	196	Right-handed alpha
Helix 31	AD4	C	213	233	Right-handed alpha
Helix 32	AD5	C	246	261	Right-handed alpha
Helix 33	AD6	C	269	273	Right-handed alpha
Helix 34	AD7	C	273	287	Right-handed alpha
Helix 35	AD8	C	297	303	Right-handed alpha
Helix 36	AD9	C	310	322	Right-handed alpha
Helix 37	AE1	C	337	351	Right-handed alpha
Helix 38	AE2	C	357	361	Right-handed 310
Helix 39	AE3	C	383	385	Right-handed 310
Helix 40	AE4	C	386	395	Right-handed alpha
Helix 41	AE5	C	413	433	Right-handed alpha
Helix 42	AE6	C	440	452	Right-handed alpha
Helix 43	AE7	C	452	461	Right-handed alpha
Helix 44	AE8	D	22	36	Right-handed alpha
Helix 45	AE9	D	54	60	Right-handed 310
Helix 46	AF1	D	85	100	Right-handed alpha
Helix 47	AF2	E	49	60	Right-handed alpha
Helix 48	AF3	E	104	108	Right-handed 310
Helix 49	AF4	E	112	121	Right-handed alpha
Helix 50	AF5	E	123	127	Right-handed 310
Helix 51	AF6	E	141	146	Right-handed alpha
Helix 52	AF7	E	154	163	Right-handed alpha
Helix 53	AF8	E	181	196	Right-handed alpha
Helix 54	AF9	E	213	233	Right-handed alpha
Helix 55	AG1	E	246	261	Right-handed alpha
Helix 56	AG2	E	269	273	Right-handed alpha
Helix 57	AG3	E	273	287	Right-handed alpha
Helix 58	AG4	E	297	303	Right-handed alpha
Helix 59	AG5	E	310	322	Right-handed alpha
Helix 60	AG6	E	337	351	Right-handed alpha
Helix 61	AG7	E	357	361	Right-handed 310
Helix 62	AG8	E	383	385	Right-handed 310
Helix 63	AG9	E	386	395	Right-handed alpha
Helix 64	AH1	E	413	433	Right-handed alpha
Helix 65	AH2	E	440	452	Right-handed alpha
Helix 66	AH3	E	452	460	Right-handed alpha
Helix 67	AH4	F	22	36	Right-handed alpha
Helix 68	AH5	F	54	60	Right-handed 310
Helix 69	AH6	F	85	100	Right-handed alpha
Helix 70	AH7	G	49	60	Right-handed alpha
Helix 71	AH8	G	104	108	Right-handed 310
Helix 72	AH9	G	112	121	Right-handed alpha
Helix 73	AI1	G	123	127	Right-handed 310
Helix 74	AI2	G	141	146	Right-handed alpha
Helix 75	AI3	G	154	163	Right-handed alpha
Helix 76	AI4	G	181	196	Right-handed alpha
Helix 77	AI5	G	213	233	Right-handed alpha
Helix 78	AI6	G	246	261	Right-handed alpha
Helix 79	AI7	G	269	273	Right-handed alpha
Helix 80	AI8	G	273	287	Right-handed alpha
Helix 81	AI9	G	297	303	Right-handed alpha
Helix 82	AJ1	G	310	322	Right-handed alpha
Helix 83	AJ2	G	337	351	Right-handed alpha
Helix 84	AJ3	G	357	361	Right-handed 310
Helix 85	AJ4	G	383	385	Right-handed 310
Helix 86	AJ5	G	386	395	Right-handed alpha
Helix 87	AJ6	G	413	433	Right-handed alpha
Helix 88	AJ7	G	440	452	Right-handed alpha
Helix 89	AJ8	G	452	461	Right-handed alpha
Helix 90	AJ9	H	22	36	Right-handed alpha
Helix 91	AK1	H	54	60	Right-handed 310
Helix 92	AK2	H	85	100	Right-handed alpha
Helix 93	AK3	I	49	60	Right-handed alpha
Helix 94	AK4	I	104	108	Right-handed 310
Helix 95	AK5	I	112	121	Right-handed alpha
Helix 96	AK6	I	123	127	Right-handed 310
Helix 97	AK7	I	141	146	Right-handed alpha
Helix 98	AK8	I	154	163	Right-handed alpha
Helix 99	AK9	I	181	196	Right-handed alpha
Helix 100	AL1	I	213	233	Right-handed alpha
Helix 101	AL2	I	246	261	Right-handed alpha
Helix 102	AL3	I	269	273	Right-handed alpha
Helix 103	AL4	I	273	287	Right-handed alpha
Helix 104	AL5	I	297	303	Right-handed alpha
Helix 105	AL6	I	310	322	Right-handed alpha
Helix 106	AL7	I	337	351	Right-handed alpha
Helix 107	AL8	I	357	361	Right-handed 310
Helix 108	AL9	I	383	385	Right-handed 310
Helix 109	AM1	I	386	395	Right-handed alpha
Helix 110	AM2	I	413	433	Right-handed alpha
Helix 111	AM3	I	440	452	Right-handed alpha
Helix 112	AM4	I	452	460	Right-handed alpha
Helix 113	AM5	J	22	36	Right-handed alpha
Helix 114	AM6	J	54	60	Right-handed 310
Helix 115	AM7	J	85	100	Right-handed alpha
Helix 116	AM8	K	49	60	Right-handed alpha
Helix 117	AM9	K	104	108	Right-handed 310
Helix 118	AN1	K	112	121	Right-handed alpha
Helix 119	AN2	K	123	127	Right-handed 310
Helix 120	AN3	K	141	146	Right-handed alpha
Helix 121	AN4	K	154	163	Right-handed alpha
Helix 122	AN5	K	181	196	Right-handed alpha
Helix 123	AN6	K	213	233	Right-handed alpha
Helix 124	AN7	K	246	261	Right-handed alpha
Helix 125	AN8	K	269	273	Right-handed alpha
Helix 126	AN9	K	273	287	Right-handed alpha
Helix 127	AO1	K	297	303	Right-handed alpha
Helix 128	AO2	K	310	322	Right-handed alpha
Helix 129	AO3	K	337	351	Right-handed alpha
Helix 130	AO4	K	357	361	Right-handed 310
Helix 131	AO5	K	383	385	Right-handed 310
Helix 132	AO6	K	386	395	Right-handed alpha
Helix 133	AO7	K	413	433	Right-handed alpha
Helix 134	AO8	K	440	452	Right-handed alpha
Helix 135	AO9	K	452	461	Right-handed alpha
Helix 136	AP1	L	22	36	Right-handed alpha
Helix 137	AP2	L	54	60	Right-handed 310
Helix 138	AP3	L	85	100	Right-handed alpha
Helix 139	AP4	M	49	60	Right-handed alpha
Helix 140	AP5	M	104	108	Right-handed 310
Helix 141	AP6	M	112	121	Right-handed alpha
Helix 142	AP7	M	123	127	Right-handed 310
Helix 143	AP8	M	141	146	Right-handed alpha
Helix 144	AP9	M	154	163	Right-handed alpha
Helix 145	AQ1	M	181	196	Right-handed alpha
Helix 146	AQ2	M	213	233	Right-handed alpha
Helix 147	AQ3	M	246	261	Right-handed alpha
Helix 148	AQ4	M	269	273	Right-handed alpha
Helix 149	AQ5	M	273	287	Right-handed alpha
Helix 150	AQ6	M	297	303	Right-handed alpha
Helix 151	AQ7	M	310	322	Right-handed alpha
Helix 152	AQ8	M	337	351	Right-handed alpha
Helix 153	AQ9	M	357	361	Right-handed 310
Helix 154	AR1	M	383	385	Right-handed 310
Helix 155	AR2	M	386	395	Right-handed alpha
Helix 156	AR3	M	413	433	Right-handed alpha
Helix 157	AR4	M	440	452	Right-handed alpha
Helix 158	AR5	M	452	461	Right-handed alpha
Helix 159	AR6	N	22	36	Right-handed alpha
Helix 160	AR7	N	54	60	Right-handed 310
Helix 161	AR8	N	85	100	Right-handed alpha
Helix 162	AR9	O	49	60	Right-handed alpha
Helix 163	AS1	O	104	108	Right-handed 310
Helix 164	AS2	O	112	121	Right-handed alpha
Helix 165	AS3	O	123	127	Right-handed 310
Helix 166	AS4	O	141	146	Right-handed alpha
Helix 167	AS5	O	154	163	Right-handed alpha
Helix 168	AS6	O	181	196	Right-handed alpha
Helix 169	AS7	O	213	233	Right-handed alpha
Helix 170	AS8	O	246	261	Right-handed alpha
Helix 171	AS9	O	269	273	Right-handed alpha
Helix 172	AT1	O	273	287	Right-handed alpha
Helix 173	AT2	O	297	303	Right-handed alpha
Helix 174	AT3	O	310	322	Right-handed alpha
Helix 175	AT4	O	337	351	Right-handed alpha
Helix 176	AT5	O	357	361	Right-handed 310
Helix 177	AT6	O	383	385	Right-handed 310
Helix 178	AT7	O	386	395	Right-handed alpha
Helix 179	AT8	O	413	433	Right-handed alpha
Helix 180	AT9	O	440	452	Right-handed alpha
Helix 181	AU1	O	452	460	Right-handed alpha
Helix 182	AU2	P	22	36	Right-handed alpha
Helix 183	AU3	P	54	60	Right-handed 310
Helix 184	AU4	P	85	100	Right-handed alpha

There are 32 sheets in PDB entry 7JN4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	89	first strand
Strand 2	A	97	103	anti-parallel
Strand 3	A	36	44	anti-parallel
Strand 4	A	130	139	anti-parallel
Strand 5	A	308	309	parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	171	first strand
Strand 2	A	399	401	parallel
Strand 3	A	375	379	parallel
Strand 4	A	325	327	parallel
Strand 5	A	290	294	parallel
Strand 6	A	264	268	parallel
Strand 7	A	237	241	parallel
Strand 8	A	199	201	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	353	354	first strand
Strand 2	A	366	367	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	74	76	first strand
Strand 2	B	38	45	anti-parallel
Strand 3	B	104	111	anti-parallel
Strand 4	B	117	124	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	83	89	first strand
Strand 2	C	97	103	anti-parallel
Strand 3	C	36	44	anti-parallel
Strand 4	C	130	139	anti-parallel
Strand 5	C	308	309	parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	171	first strand
Strand 2	C	399	401	parallel
Strand 3	C	375	379	parallel
Strand 4	C	325	327	parallel
Strand 5	C	290	294	parallel
Strand 6	C	264	268	parallel
Strand 7	C	237	241	parallel
Strand 8	C	199	201	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	353	354	first strand
Strand 2	C	366	367	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	74	76	first strand
Strand 2	D	38	45	anti-parallel
Strand 3	D	104	111	anti-parallel
Strand 4	D	117	124	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	83	89	first strand
Strand 2	E	97	103	anti-parallel
Strand 3	E	36	44	anti-parallel
Strand 4	E	130	139	anti-parallel
Strand 5	E	308	309	parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	169	171	first strand
Strand 2	E	399	401	parallel
Strand 3	E	375	379	parallel
Strand 4	E	325	327	parallel
Strand 5	E	290	294	parallel
Strand 6	E	264	268	parallel
Strand 7	E	237	241	parallel
Strand 8	E	199	201	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	353	354	first strand
Strand 2	E	366	367	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	74	76	first strand
Strand 2	F	38	45	anti-parallel
Strand 3	F	104	111	anti-parallel
Strand 4	F	117	124	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	83	89	first strand
Strand 2	G	97	103	anti-parallel
Strand 3	G	36	44	anti-parallel
Strand 4	G	130	139	anti-parallel
Strand 5	G	308	309	parallel

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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	169	171	first strand
Strand 2	G	399	401	parallel
Strand 3	G	375	379	parallel
Strand 4	G	325	327	parallel
Strand 5	G	290	294	parallel
Strand 6	G	264	268	parallel
Strand 7	G	237	241	parallel
Strand 8	G	199	201	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	353	354	first strand
Strand 2	G	366	367	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	74	76	first strand
Strand 2	H	38	45	anti-parallel
Strand 3	H	104	111	anti-parallel
Strand 4	H	117	124	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	83	89	first strand
Strand 2	I	97	103	anti-parallel
Strand 3	I	36	44	anti-parallel
Strand 4	I	130	139	anti-parallel
Strand 5	I	308	309	parallel

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There are 8 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	169	171	first strand
Strand 2	I	399	401	parallel
Strand 3	I	375	379	parallel
Strand 4	I	325	327	parallel
Strand 5	I	290	294	parallel
Strand 6	I	264	268	parallel
Strand 7	I	237	241	parallel
Strand 8	I	199	201	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	353	354	first strand
Strand 2	I	366	367	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	74	76	first strand
Strand 2	J	38	45	anti-parallel
Strand 3	J	104	111	anti-parallel
Strand 4	J	117	124	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	83	89	first strand
Strand 2	K	97	103	anti-parallel
Strand 3	K	36	44	anti-parallel
Strand 4	K	130	139	anti-parallel
Strand 5	K	308	309	parallel

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There are 8 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	169	171	first strand
Strand 2	K	399	401	parallel
Strand 3	K	375	379	parallel
Strand 4	K	325	327	parallel
Strand 5	K	290	294	parallel
Strand 6	K	264	268	parallel
Strand 7	K	237	241	parallel
Strand 8	K	199	201	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	353	354	first strand
Strand 2	K	366	367	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	74	76	first strand
Strand 2	L	38	45	anti-parallel
Strand 3	L	104	111	anti-parallel
Strand 4	L	117	124	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	83	89	first strand
Strand 2	M	97	103	anti-parallel
Strand 3	M	36	44	anti-parallel
Strand 4	M	130	139	anti-parallel
Strand 5	M	308	309	parallel

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There are 8 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	169	171	first strand
Strand 2	M	399	401	parallel
Strand 3	M	375	379	parallel
Strand 4	M	325	327	parallel
Strand 5	M	290	294	parallel
Strand 6	M	264	268	parallel
Strand 7	M	237	241	parallel
Strand 8	M	199	201	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	353	354	first strand
Strand 2	M	366	367	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	74	76	first strand
Strand 2	N	38	45	anti-parallel
Strand 3	N	104	111	anti-parallel
Strand 4	N	117	124	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	83	89	first strand
Strand 2	O	97	103	anti-parallel
Strand 3	O	36	44	anti-parallel
Strand 4	O	130	139	anti-parallel
Strand 5	O	308	309	parallel

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There are 8 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	169	171	first strand
Strand 2	O	399	401	parallel
Strand 3	O	375	379	parallel
Strand 4	O	325	327	parallel
Strand 5	O	290	294	parallel
Strand 6	O	264	268	parallel
Strand 7	O	237	241	parallel
Strand 8	O	199	201	parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	353	354	first strand
Strand 2	O	366	367	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	74	76	first strand
Strand 2	P	38	45	anti-parallel
Strand 3	P	104	111	anti-parallel
Strand 4	P	117	124	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7JN4

Analysis of interatomic Contacts of Structural Units in PDB entry:
7JN4