Analysis of interatomic Contacts of Structural Units in PDB entry:
7JN7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7JN7 entry

There are 4 chains in PDB entry 7JN7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 18	LEU 863
B	GLY 166	PRO 445
C	LEU 320	PRO 446
D	ASP 18	LEU 863

There are 42 helices in PDB entry 7JN7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	19	23	Right-handed 310
Helix 2	AA2	A	30	42	Right-handed alpha
Helix 3	AA3	A	44	49	Right-handed alpha
Helix 4	AA4	A	116	120	Right-handed 310
Helix 5	AA5	A	122	132	Right-handed alpha
Helix 6	AA6	A	243	250	Right-handed alpha
Helix 7	AA7	A	341	346	Right-handed alpha
Helix 8	AA8	A	382	384	Right-handed 310
Helix 9	AA9	A	392	403	Right-handed alpha
Helix 10	AB1	A	446	450	Right-handed alpha
Helix 11	AB2	A	661	671	Right-handed alpha
Helix 12	AB3	A	686	691	Right-handed alpha
Helix 13	AB4	A	692	694	Right-handed 310
Helix 14	AB5	A	700	716	Right-handed alpha
Helix 15	AB6	A	730	743	Right-handed alpha
Helix 16	AB7	A	763	771	Right-handed alpha
Helix 17	AB8	A	778	784	Right-handed alpha
Helix 18	AB9	A	785	793	Right-handed 310
Helix 19	AC1	A	812	827	Right-handed alpha
Helix 20	AC2	A	844	863	Right-handed alpha
Helix 21	AC3	B	317	321	Right-handed 310
Helix 22	AC4	B	348	359	Right-handed alpha
Helix 23	AC5	B	360	362	Right-handed 310
Helix 24	AC6	C	348	359	Right-handed alpha
Helix 25	AC7	D	30	42	Right-handed alpha
Helix 26	AC8	D	243	250	Right-handed alpha
Helix 27	AC9	D	294	298	Right-handed 310
Helix 28	AD1	D	341	346	Right-handed alpha
Helix 29	AD2	D	382	384	Right-handed 310
Helix 30	AD3	D	392	403	Right-handed alpha
Helix 31	AD4	D	583	587	Right-handed 310
Helix 32	AD5	D	661	671	Right-handed alpha
Helix 33	AD6	D	686	691	Right-handed alpha
Helix 34	AD7	D	692	694	Right-handed 310
Helix 35	AD8	D	700	716	Right-handed alpha
Helix 36	AD9	D	730	743	Right-handed alpha
Helix 37	AE1	D	758	762	Right-handed 310
Helix 38	AE2	D	763	772	Right-handed alpha
Helix 39	AE3	D	777	785	Right-handed alpha
Helix 40	AE4	D	786	793	Right-handed 310
Helix 41	AE5	D	812	827	Right-handed alpha
Helix 42	AE6	D	844	863	Right-handed alpha

There are 32 sheets in PDB entry 7JN7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	54	60	first strand
Strand 2	A	68	76	anti-parallel
Strand 3	A	85	92	anti-parallel
Strand 4	A	106	107	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	103	first strand
Strand 2	B	275	279	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	142	145	first strand
Strand 2	A	150	155	anti-parallel
Strand 3	A	158	163	anti-parallel
Strand 4	A	178	180	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	188	193	first strand
Strand 2	A	200	205	anti-parallel
Strand 3	A	208	213	anti-parallel
Strand 4	A	219	221	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	237	239	first strand
Strand 2	A	271	281	anti-parallel
Strand 3	A	263	264	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	256	258	first strand
Strand 2	A	271	281	anti-parallel
Strand 3	A	314	324	anti-parallel
Strand 4	A	330	338	anti-parallel
Strand 5	A	386	388	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	287	291	first strand
Strand 2	A	300	304	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	351	357	first strand
Strand 2	A	364	369	anti-parallel
Strand 3	A	375	381	anti-parallel
Strand 4	A	410	416	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	439	445	first strand
Strand 2	A	453	459	anti-parallel
Strand 3	A	483	488	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	505	507	first strand
Strand 2	A	512	517	anti-parallel
Strand 3	A	526	531	anti-parallel
Strand 4	A	539	540	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	547	552	first strand
Strand 2	A	558	564	anti-parallel
Strand 3	A	571	578	anti-parallel
Strand 4	A	588	596	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	609	614	first strand
Strand 2	A	620	626	anti-parallel
Strand 3	A	673	678	anti-parallel
Strand 4	A	637	642	parallel
Strand 5	A	719	729	parallel
Strand 6	A	749	753	parallel
Strand 7	A	800	805	parallel
Strand 8	A	831	835	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	171	174	first strand
Strand 2	B	179	184	anti-parallel
Strand 3	B	205	209	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	191	192	first strand
Strand 2	B	197	201	anti-parallel
Strand 3	B	245	251	anti-parallel
Strand 4	B	288	292	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	211	212	first strand
Strand 2	B	234	235	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	266	267	first strand
Strand 2	B	311	312	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	326	334	first strand
Strand 2	B	337	345	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	396	398	first strand
Strand 2	B	381	386	anti-parallel
Strand 3	B	421	428	anti-parallel
Strand 4	B	434	441	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	322	323	first strand
Strand 2	C	376	377	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	327	329	first strand
Strand 2	C	342	344	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	396	397	first strand
Strand 2	C	382	386	anti-parallel
Strand 3	C	421	428	anti-parallel
Strand 4	C	434	441	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	54	60	first strand
Strand 2	D	68	75	anti-parallel
Strand 3	D	87	92	anti-parallel
Strand 4	D	106	107	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	142	145	first strand
Strand 2	D	150	154	anti-parallel
Strand 3	D	159	161	anti-parallel
Strand 4	D	178	180	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	189	193	first strand
Strand 2	D	200	205	anti-parallel
Strand 3	D	208	213	anti-parallel
Strand 4	D	219	221	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	237	239	first strand
Strand 2	D	275	281	anti-parallel
Strand 3	D	314	324	anti-parallel
Strand 4	D	271	273	anti-parallel
Strand 5	D	263	264	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	256	258	first strand
Strand 2	D	275	281	anti-parallel
Strand 3	D	314	324	anti-parallel
Strand 4	D	330	338	anti-parallel
Strand 5	D	386	388	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	287	291	first strand
Strand 2	D	300	304	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	351	355	first strand
Strand 2	D	364	369	anti-parallel
Strand 3	D	375	381	anti-parallel
Strand 4	D	410	416	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	440	445	first strand
Strand 2	D	453	459	anti-parallel
Strand 3	D	483	488	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	505	507	first strand
Strand 2	D	512	517	anti-parallel
Strand 3	D	526	531	anti-parallel
Strand 4	D	539	540	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	547	552	first strand
Strand 2	D	558	564	anti-parallel
Strand 3	D	571	578	anti-parallel
Strand 4	D	588	596	anti-parallel

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There are 8 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	609	614	first strand
Strand 2	D	620	626	anti-parallel
Strand 3	D	673	678	anti-parallel
Strand 4	D	637	642	parallel
Strand 5	D	719	729	parallel
Strand 6	D	749	753	parallel
Strand 7	D	800	805	parallel
Strand 8	D	831	835	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7JN7

Analysis of interatomic Contacts of Structural Units in PDB entry:
7JN7