Analysis of interatomic Contacts of Structural Units in PDB entry:
7JNF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7JNF entry

There is 1 chain in PDB entry 7JNF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 32PRO 433
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 7JNF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
55 59Right-handed 310
Helix 2
AA2
A
61 70Right-handed alpha
Helix 3
AA3
A
72 74Right-handed 310
Helix 4
AA4
A
90 95Right-handed 310
Helix 5
AA5
A
212 220Right-handed alpha
Helix 6
AA6
A
231 235Right-handed 310
Helix 7
AA7
A
236 247Right-handed alpha
Helix 8
AA8
A
252 268Right-handed alpha
Helix 9
AA9
A
283 286Right-handed 310
Helix 10
AB1
A
287 295Right-handed alpha
Helix 11
AB2
A
297 299Right-handed 310
Helix 12
AB3
A
315 320Right-handed 310
Helix 13
AB4
A
420 422Right-handed 310
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There are 6 sheets in PDB entry 7JNF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 53first strand
Strand 2
A
177 196anti-parallel
Strand 3
A
116 133anti-parallel
Strand 4
A
145 153first strand
Strand 5
A
162 168anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 81first strand
Strand 2
A
116 133anti-parallel
Strand 3
A
177 196anti-parallel
Strand 4
A
205 209first strand
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 104first strand
Strand 2
A
202 203anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
275 276first strand
Strand 2
A
385 391parallel
Strand 3
A
368 376anti-parallel
Strand 4
A
398 418anti-parallel
Strand 5
A
340 357anti-parallel
Strand 6
A
301 306anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
278 282first strand
Strand 2
A
398 418anti-parallel
Strand 3
A
340 357anti-parallel
Strand 4
A
428 431anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
328 329first strand
Strand 2
A
424 425anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il