Analysis of interatomic Contacts of Structural Units in PDB entry:
7JNT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7JNT entry

There are 8 chains in PDB entry 7JNT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 25	ARG 417
B	GLY 23	ARG 417
C	GLY 23	ARG 417
D	SER 25	ARG 417
E	GLY 23	ARG 417
F	SER 25	ARG 417
G	GLY 23	ARG 417
H	SER 25	ARG 417

There are152 helices in PDB entry 7JNT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	25	36	Right-handed alpha
Helix 2	AA2	A	42	58	Right-handed alpha
Helix 3	AA3	A	61	64	Right-handed 310
Helix 4	AA4	A	65	86	Right-handed alpha
Helix 5	AA5	A	88	90	Right-handed 310
Helix 6	AA6	A	125	131	Right-handed alpha
Helix 7	AA7	A	136	147	Right-handed alpha
Helix 8	AA8	A	177	184	Right-handed alpha
Helix 9	AA9	A	187	208	Right-handed alpha
Helix 10	AB1	A	216	218	Right-handed 310
Helix 11	AB2	A	258	263	Right-handed alpha
Helix 12	AB3	A	273	290	Right-handed alpha
Helix 13	AB4	A	298	308	Right-handed alpha
Helix 14	AB5	A	308	313	Right-handed alpha
Helix 15	AB6	A	322	333	Right-handed alpha
Helix 16	AB7	A	345	350	Right-handed alpha
Helix 17	AB8	A	351	355	Right-handed 310
Helix 18	AB9	A	363	367	Right-handed 310
Helix 19	AC1	A	407	411	Right-handed 310
Helix 20	AC2	B	24	36	Right-handed alpha
Helix 21	AC3	B	42	58	Right-handed alpha
Helix 22	AC4	B	61	64	Right-handed 310
Helix 23	AC5	B	65	86	Right-handed alpha
Helix 24	AC6	B	88	90	Right-handed 310
Helix 25	AC7	B	125	131	Right-handed alpha
Helix 26	AC8	B	136	147	Right-handed alpha
Helix 27	AC9	B	177	184	Right-handed alpha
Helix 28	AD1	B	187	208	Right-handed alpha
Helix 29	AD2	B	216	218	Right-handed 310
Helix 30	AD3	B	258	263	Right-handed alpha
Helix 31	AD4	B	273	290	Right-handed alpha
Helix 32	AD5	B	298	308	Right-handed alpha
Helix 33	AD6	B	308	313	Right-handed alpha
Helix 34	AD7	B	322	333	Right-handed alpha
Helix 35	AD8	B	345	350	Right-handed alpha
Helix 36	AD9	B	351	355	Right-handed 310
Helix 37	AE1	B	363	367	Right-handed 310
Helix 38	AE2	B	407	411	Right-handed 310
Helix 39	AE3	C	24	36	Right-handed alpha
Helix 40	AE4	C	42	58	Right-handed alpha
Helix 41	AE5	C	61	64	Right-handed 310
Helix 42	AE6	C	65	86	Right-handed alpha
Helix 43	AE7	C	88	90	Right-handed 310
Helix 44	AE8	C	125	131	Right-handed alpha
Helix 45	AE9	C	136	147	Right-handed alpha
Helix 46	AF1	C	177	184	Right-handed alpha
Helix 47	AF2	C	187	208	Right-handed alpha
Helix 48	AF3	C	216	218	Right-handed 310
Helix 49	AF4	C	258	265	Right-handed alpha
Helix 50	AF5	C	273	290	Right-handed alpha
Helix 51	AF6	C	298	308	Right-handed alpha
Helix 52	AF7	C	308	313	Right-handed alpha
Helix 53	AF8	C	322	333	Right-handed alpha
Helix 54	AF9	C	345	350	Right-handed alpha
Helix 55	AG1	C	351	355	Right-handed 310
Helix 56	AG2	C	363	367	Right-handed 310
Helix 57	AG3	C	407	411	Right-handed 310
Helix 58	AG4	D	26	36	Right-handed alpha
Helix 59	AG5	D	42	58	Right-handed alpha
Helix 60	AG6	D	61	64	Right-handed 310
Helix 61	AG7	D	65	86	Right-handed alpha
Helix 62	AG8	D	88	90	Right-handed 310
Helix 63	AG9	D	125	131	Right-handed alpha
Helix 64	AH1	D	136	147	Right-handed alpha
Helix 65	AH2	D	176	184	Right-handed alpha
Helix 66	AH3	D	187	208	Right-handed alpha
Helix 67	AH4	D	216	218	Right-handed 310
Helix 68	AH5	D	273	290	Right-handed alpha
Helix 69	AH6	D	298	308	Right-handed alpha
Helix 70	AH7	D	308	313	Right-handed alpha
Helix 71	AH8	D	322	333	Right-handed alpha
Helix 72	AH9	D	345	350	Right-handed alpha
Helix 73	AI1	D	351	355	Right-handed 310
Helix 74	AI2	D	363	367	Right-handed 310
Helix 75	AI3	D	407	411	Right-handed 310
Helix 76	AI4	E	24	36	Right-handed alpha
Helix 77	AI5	E	42	58	Right-handed alpha
Helix 78	AI6	E	61	64	Right-handed 310
Helix 79	AI7	E	65	86	Right-handed alpha
Helix 80	AI8	E	88	90	Right-handed 310
Helix 81	AI9	E	125	131	Right-handed alpha
Helix 82	AJ1	E	136	147	Right-handed alpha
Helix 83	AJ2	E	177	184	Right-handed alpha
Helix 84	AJ3	E	187	208	Right-handed alpha
Helix 85	AJ4	E	216	218	Right-handed 310
Helix 86	AJ5	E	253	257	Right-handed 310
Helix 87	AJ6	E	258	265	Right-handed alpha
Helix 88	AJ7	E	273	290	Right-handed alpha
Helix 89	AJ8	E	298	308	Right-handed alpha
Helix 90	AJ9	E	308	313	Right-handed alpha
Helix 91	AK1	E	322	333	Right-handed alpha
Helix 92	AK2	E	345	350	Right-handed alpha
Helix 93	AK3	E	351	355	Right-handed 310
Helix 94	AK4	E	363	367	Right-handed 310
Helix 95	AK5	E	407	411	Right-handed 310
Helix 96	AK6	F	26	36	Right-handed alpha
Helix 97	AK7	F	42	58	Right-handed alpha
Helix 98	AK8	F	61	64	Right-handed 310
Helix 99	AK9	F	65	86	Right-handed alpha
Helix 100	AL1	F	88	90	Right-handed 310
Helix 101	AL2	F	125	131	Right-handed alpha
Helix 102	AL3	F	136	147	Right-handed alpha
Helix 103	AL4	F	177	184	Right-handed alpha
Helix 104	AL5	F	187	208	Right-handed alpha
Helix 105	AL6	F	216	218	Right-handed 310
Helix 106	AL7	F	258	263	Right-handed alpha
Helix 107	AL8	F	273	290	Right-handed alpha
Helix 108	AL9	F	298	308	Right-handed alpha
Helix 109	AM1	F	308	313	Right-handed alpha
Helix 110	AM2	F	322	333	Right-handed alpha
Helix 111	AM3	F	345	350	Right-handed alpha
Helix 112	AM4	F	351	355	Right-handed 310
Helix 113	AM5	F	363	367	Right-handed 310
Helix 114	AM6	F	407	411	Right-handed 310
Helix 115	AM7	G	24	36	Right-handed alpha
Helix 116	AM8	G	42	58	Right-handed alpha
Helix 117	AM9	G	61	64	Right-handed 310
Helix 118	AN1	G	65	86	Right-handed alpha
Helix 119	AN2	G	88	90	Right-handed 310
Helix 120	AN3	G	125	131	Right-handed alpha
Helix 121	AN4	G	136	147	Right-handed alpha
Helix 122	AN5	G	177	184	Right-handed alpha
Helix 123	AN6	G	187	208	Right-handed alpha
Helix 124	AN7	G	216	218	Right-handed 310
Helix 125	AN8	G	258	265	Right-handed alpha
Helix 126	AN9	G	273	290	Right-handed alpha
Helix 127	AO1	G	298	308	Right-handed alpha
Helix 128	AO2	G	308	313	Right-handed alpha
Helix 129	AO3	G	322	333	Right-handed alpha
Helix 130	AO4	G	345	350	Right-handed alpha
Helix 131	AO5	G	351	355	Right-handed 310
Helix 132	AO6	G	363	367	Right-handed 310
Helix 133	AO7	G	407	411	Right-handed 310
Helix 134	AO8	H	26	36	Right-handed alpha
Helix 135	AO9	H	42	58	Right-handed alpha
Helix 136	AP1	H	61	64	Right-handed 310
Helix 137	AP2	H	65	86	Right-handed alpha
Helix 138	AP3	H	88	90	Right-handed 310
Helix 139	AP4	H	125	131	Right-handed alpha
Helix 140	AP5	H	136	147	Right-handed alpha
Helix 141	AP6	H	177	184	Right-handed alpha
Helix 142	AP7	H	187	208	Right-handed alpha
Helix 143	AP8	H	216	218	Right-handed 310
Helix 144	AP9	H	258	263	Right-handed alpha
Helix 145	AQ1	H	273	290	Right-handed alpha
Helix 146	AQ2	H	298	308	Right-handed alpha
Helix 147	AQ3	H	308	313	Right-handed alpha
Helix 148	AQ4	H	322	333	Right-handed alpha
Helix 149	AQ5	H	345	350	Right-handed alpha
Helix 150	AQ6	H	351	355	Right-handed 310
Helix 151	AQ7	H	363	367	Right-handed 310
Helix 152	AQ8	H	407	411	Right-handed 310

There are 29 sheets in PDB entry 7JNT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	100	first strand
Strand 2	A	105	111	anti-parallel
Strand 3	A	117	124	anti-parallel
Strand 4	A	164	169	anti-parallel
Strand 5	A	155	160	anti-parallel
Strand 6	A	415	416	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	175	176	first strand
Strand 2	A	220	222	anti-parallel
Strand 3	A	228	230	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	210	211	first strand
Strand 2	A	237	238	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	244	245	first strand
Strand 2	A	271	272	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	92	101	first strand
Strand 2	B	104	111	anti-parallel
Strand 3	B	117	124	anti-parallel
Strand 4	B	164	169	anti-parallel
Strand 5	B	155	160	anti-parallel
Strand 6	B	415	416	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	175	176	first strand
Strand 2	B	220	222	anti-parallel
Strand 3	B	228	230	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	210	211	first strand
Strand 2	B	237	238	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	92	101	first strand
Strand 2	C	104	111	anti-parallel
Strand 3	C	117	124	anti-parallel
Strand 4	C	164	169	anti-parallel
Strand 5	C	155	160	anti-parallel
Strand 6	C	415	416	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	175	176	first strand
Strand 2	C	220	222	anti-parallel
Strand 3	C	228	230	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	210	211	first strand
Strand 2	C	237	238	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	92	101	first strand
Strand 2	D	104	111	anti-parallel
Strand 3	D	117	124	anti-parallel
Strand 4	D	164	169	anti-parallel
Strand 5	D	155	160	anti-parallel
Strand 6	D	415	416	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	210	211	first strand
Strand 2	D	237	238	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	220	222	first strand
Strand 2	D	228	230	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	92	101	first strand
Strand 2	E	104	111	anti-parallel
Strand 3	E	117	124	anti-parallel
Strand 4	E	164	169	anti-parallel
Strand 5	E	155	160	anti-parallel
Strand 6	E	415	416	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	175	176	first strand
Strand 2	E	220	222	anti-parallel
Strand 3	E	228	230	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	210	211	first strand
Strand 2	E	237	238	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	245	246	first strand
Strand 2	E	270	271	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	92	101	first strand
Strand 2	F	104	111	anti-parallel
Strand 3	F	117	124	anti-parallel
Strand 4	F	164	169	anti-parallel
Strand 5	F	155	160	anti-parallel
Strand 6	F	415	416	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	175	176	first strand
Strand 2	F	220	222	anti-parallel
Strand 3	F	228	230	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	210	211	first strand
Strand 2	F	237	238	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	245	246	first strand
Strand 2	F	270	271	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	92	101	first strand
Strand 2	G	104	111	anti-parallel
Strand 3	G	117	124	anti-parallel
Strand 4	G	164	169	anti-parallel
Strand 5	G	155	160	anti-parallel
Strand 6	G	415	416	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	175	176	first strand
Strand 2	G	220	222	anti-parallel
Strand 3	G	228	230	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	210	211	first strand
Strand 2	G	237	238	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	244	246	first strand
Strand 2	G	270	272	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	92	101	first strand
Strand 2	H	104	111	anti-parallel
Strand 3	H	117	124	anti-parallel
Strand 4	H	164	169	anti-parallel
Strand 5	H	155	160	anti-parallel
Strand 6	H	415	416	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	175	176	first strand
Strand 2	H	220	222	anti-parallel
Strand 3	H	228	230	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	210	211	first strand
Strand 2	H	237	238	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	245	247	first strand
Strand 2	H	269	271	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7JNT

Analysis of interatomic Contacts of Structural Units in PDB entry:
7JNT