Analysis of interatomic Contacts of Structural Units in PDB entry:
7JO7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7JO7 entry

There are 4 chains in PDB entry 7JO7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 859	GLU 949
B	GLY 855	GLU 949
C	LEU 857	GLU 949
D	PRO 856	ALA 950

There are 6 helices in PDB entry 7JO7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	901	906	Right-handed alpha
Helix 2	AA2	A	927	937	Right-handed alpha
Helix 3	AA3	B	927	937	Right-handed alpha
Helix 4	AA4	C	927	936	Right-handed alpha
Helix 5	AA5	D	901	907	Right-handed alpha
Helix 6	AA6	D	927	937	Right-handed alpha

There are 8 sheets in PDB entry 7JO7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	860	866	first strand
Strand 2	A	941	947	anti-parallel
Strand 3	A	914	918	anti-parallel
Strand 4	A	921	922	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	875	877	first strand
Strand 2	A	893	896	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	859	866	first strand
Strand 2	B	941	948	anti-parallel
Strand 3	B	914	918	anti-parallel
Strand 4	B	921	922	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	874	877	first strand
Strand 2	B	893	897	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	874	878	first strand
Strand 2	C	892	897	anti-parallel
Strand 3	C	914	918	anti-parallel
Strand 4	C	941	948	anti-parallel
Strand 5	C	859	866	anti-parallel
Strand 6	C	903	904	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	874	878	first strand
Strand 2	C	892	897	anti-parallel
Strand 3	C	914	918	anti-parallel
Strand 4	C	921	922	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	860	866	first strand
Strand 2	D	941	947	anti-parallel
Strand 3	D	914	918	anti-parallel
Strand 4	D	921	922	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	874	877	first strand
Strand 2	D	893	897	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7JO7

Analysis of interatomic Contacts of Structural Units in PDB entry:
7JO7