Analysis of interatomic Contacts of Structural Units in PDB entry:
7JOD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7JOD entry

There are 2 chains in PDB entry 7JOD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
E
 ILE 16ALA 244
I
 GLY 0GLU 165
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 5 helices in PDB entry 7JOD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
E
55 59Right-handed 310
Helix 2
AA2
E
74 77Right-handed 310
Helix 3
AA3
E
164 173Right-handed alpha
Helix 4
AA4
E
234 244Right-handed alpha
Helix 5
AA5
I
127 130Right-handed 310
Back to top of page

There are 7 sheets in PDB entry 7JOD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
20 21first strand
Strand 2
E
156 161anti-parallel
Strand 3
E
135 140anti-parallel
Strand 4
E
198 201anti-parallel
Strand 5
E
208 215anti-parallel
Strand 6
E
225 230anti-parallel
Strand 7
E
180 184anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
30 35first strand
Strand 2
E
38 48anti-parallel
Strand 3
E
51 54anti-parallel
Strand 4
E
104 108anti-parallel
Strand 5
E
81 90anti-parallel
Strand 6
E
63 67anti-parallel
Strand 7
E
30 35anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
19 23first strand
Strand 2
I
157 161anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
30 34first strand
Strand 2
I
44 48anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
57 60first strand
Strand 2
I
75 78anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
87 93first strand
Strand 2
I
97 103anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
112 117first strand
Strand 2
I
120 125anti-parallel
Strand 3
I
134 141anti-parallel
Strand 4
I
144 149anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il