Analysis of interatomic Contacts of Structural Units in PDB entry:
7JOZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7JOZ entry

There are 5 chains in PDB entry 7JOZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 10	LEU 380
B	GLY 1	ASN 340
G	THR 6	ARG 62
N	GLN 1	SER 128
R	ILE 1003	GLY 346

There are 45 helices in PDB entry 7JOZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	38	Right-handed alpha
Helix 2	AA2	A	51	58	Right-handed alpha
Helix 3	AA3	A	73	83	Right-handed alpha
Helix 4	AA4	A	83	94	Right-handed alpha
Helix 5	AA5	A	110	120	Right-handed alpha
Helix 6	AA6	A	131	141	Right-handed alpha
Helix 7	AA7	A	162	167	Right-handed alpha
Helix 8	AA8	A	179	186	Right-handed alpha
Helix 9	AA9	A	220	224	Right-handed 310
Helix 10	AB1	A	250	264	Right-handed alpha
Helix 11	AB2	A	281	286	Right-handed alpha
Helix 12	AB3	A	293	298	Right-handed alpha
Helix 13	AB4	A	299	302	Right-handed 310
Helix 14	AB5	A	317	336	Right-handed alpha
Helix 15	AB6	A	353	377	Right-handed alpha
Helix 16	AB7	B	2	25	Right-handed alpha
Helix 17	AB8	G	12	21	Right-handed alpha
Helix 18	AB9	G	29	34	Right-handed alpha
Helix 19	AC1	G	34	44	Right-handed alpha
Helix 20	AC2	N	28	32	Right-handed 310
Helix 21	AC3	R	1006	1011	Right-handed alpha
Helix 22	AC4	R	1038	1051	Right-handed alpha
Helix 23	AC5	R	1059	1081	Right-handed alpha
Helix 24	AC6	R	1084	1091	Right-handed alpha
Helix 25	AC7	R	1092	1106	Right-handed alpha
Helix 26	AC8	R	1107	1112	Right-handed alpha
Helix 27	AC9	R	1114	1123	Right-handed alpha
Helix 28	AD1	R	1125	1135	Right-handed alpha
Helix 29	AD2	R	1142	1147	Right-handed alpha
Helix 30	AD3	R	1149	1156	Right-handed alpha
Helix 31	AD4	R	1161	51	Right-handed alpha
Helix 32	AD5	R	57	59	Right-handed 310
Helix 33	AD6	R	60	77	Right-handed alpha
Helix 34	AD7	R	77	84	Right-handed alpha
Helix 35	AD8	R	95	127	Right-handed alpha
Helix 36	AD9	R	127	135	Right-handed alpha
Helix 37	AE1	R	136	155	Right-handed alpha
Helix 38	AE2	R	191	203	Right-handed alpha
Helix 39	AE3	R	203	237	Right-handed alpha
Helix 40	AE4	R	238	240	Right-handed 310
Helix 41	AE5	R	264	293	Right-handed alpha
Helix 42	AE6	R	294	298	Right-handed 310
Helix 43	AE7	R	309	322	Right-handed alpha
Helix 44	AE8	R	322	332	Right-handed alpha
Helix 45	AE9	R	334	345	Right-handed alpha

There are 11 sheets in PDB entry 7JOZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	193	200	first strand
Strand 2	A	203	210	anti-parallel
Strand 3	A	40	46	parallel
Strand 4	A	229	234	parallel
Strand 5	A	272	277	parallel
Strand 6	A	345	349	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	51	first strand
Strand 2	B	335	339	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	60	first strand
Strand 2	B	71	74	anti-parallel
Strand 3	B	78	81	anti-parallel
Strand 4	B	91	94	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	121	125	anti-parallel
Strand 4	B	134	139	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	148	151	first strand
Strand 2	B	157	160	anti-parallel
Strand 3	B	166	170	anti-parallel
Strand 4	B	175	180	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	189	first strand
Strand 2	B	200	203	anti-parallel
Strand 3	B	208	210	anti-parallel
Strand 4	B	220	222	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	259	264	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	275	277	first strand
Strand 2	B	284	288	anti-parallel
Strand 3	B	293	298	anti-parallel
Strand 4	B	304	309	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	4	6	first strand
Strand 2	N	18	24	anti-parallel
Strand 3	N	78	83	anti-parallel
Strand 4	N	68	73	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	10	12	first strand
Strand 2	N	122	126	parallel
Strand 3	N	92	98	anti-parallel
Strand 4	N	34	39	anti-parallel
Strand 5	N	45	51	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	1014	1018	first strand
Strand 2	R	1026	1028	anti-parallel
Strand 3	R	1031	1032	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7JOZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
7JOZ