Analysis of interatomic Contacts of Structural Units in PDB entry:
7JP2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7JP2 entry

There are 2 chains in PDB entry 7JP2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 331
B
 MET 1ARG 284
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 7JP2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 23Right-handed alpha
Helix 2
AA2
A
36 44Right-handed 310
Helix 3
AA3
A
58 69Right-handed alpha
Helix 4
AA4
A
84 91Right-handed alpha
Helix 5
AA5
A
102 119Right-handed alpha
Helix 6
AA6
A
120 130Right-handed alpha
Helix 7
AA7
A
136 140Right-handed 310
Helix 8
AA8
A
143 146Right-handed 310
Helix 9
AA9
A
155 168Right-handed alpha
Helix 10
AB1
A
181 186Right-handed 310
Helix 11
AB2
A
191 199Right-handed alpha
Helix 12
AB3
A
217 223Right-handed alpha
Helix 13
AB4
A
235 239Right-handed 310
Helix 14
AB5
A
240 250Right-handed alpha
Helix 15
AB6
A
279 288Right-handed alpha
Helix 16
AB7
A
301 321Right-handed alpha
Helix 17
AB8
B
12 23Right-handed alpha
Helix 18
AB9
B
36 44Right-handed 310
Helix 19
AC1
B
58 68Right-handed alpha
Helix 20
AC2
B
84 91Right-handed alpha
Helix 21
AC3
B
102 119Right-handed alpha
Helix 22
AC4
B
120 130Right-handed alpha
Helix 23
AC5
B
136 140Right-handed 310
Helix 24
AC6
B
143 146Right-handed 310
Helix 25
AC7
B
155 168Right-handed alpha
Helix 26
AC8
B
181 186Right-handed 310
Helix 27
AC9
B
191 199Right-handed alpha
Helix 28
AD1
B
209 213Right-handed 310
Helix 29
AD2
B
217 223Right-handed alpha
Helix 30
AD3
B
235 239Right-handed 310
Helix 31
AD4
B
240 250Right-handed alpha
Helix 32
AD5
B
279 288Right-handed alpha
Helix 33
AD6
B
301 321Right-handed alpha
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There are 4 sheets in PDB entry 7JP2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 30first strand
Strand 2
A
2 5parallel
Strand 3
A
48 51parallel
Strand 4
A
72 75parallel
Strand 5
A
94 96parallel
Strand 6
A
328 329anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 189first strand
Strand 2
A
171 175parallel
Strand 3
A
148 152parallel
Strand 4
A
201 204parallel
Strand 5
A
228 232parallel
Strand 6
A
253 258parallel
Strand 7
A
291 293parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
28 30first strand
Strand 2
B
3 5parallel
Strand 3
B
48 51parallel
Strand 4
B
72 75parallel
Strand 5
B
94 96parallel
Strand 6
B
328 329anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
188 189first strand
Strand 2
B
171 175parallel
Strand 3
B
148 152parallel
Strand 4
B
201 204parallel
Strand 5
B
228 232parallel
Strand 6
B
253 258parallel
Strand 7
B
291 293parallel
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