Analysis of interatomic Contacts of Structural Units in PDB entry:
7JP4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7JP4 entry

There are 2 chains in PDB entry 7JP4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 50ARG 261
B
 ALA 50ARG 261
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 7JP4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
58 65Right-handed alpha
Helix 2
AA2
A
99 108Right-handed alpha
Helix 3
AA3
A
120 125Right-handed alpha
Helix 4
AA4
A
186 195Right-handed alpha
Helix 5
AA5
B
58 65Right-handed alpha
Helix 6
AA6
B
99 107Right-handed alpha
Helix 7
AA7
B
120 125Right-handed alpha
Helix 8
AA8
B
186 195Right-handed alpha
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There are 10 sheets in PDB entry 7JP4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 53first strand
Strand 2
A
81 82parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 78first strand
Strand 2
A
110 117anti-parallel
Strand 3
A
255 260anti-parallel
Strand 4
A
174 183anti-parallel
Strand 5
A
250 253anti-parallel
Strand 6
A
150 152anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 78first strand
Strand 2
A
110 117anti-parallel
Strand 3
A
255 260anti-parallel
Strand 4
A
174 183anti-parallel
Strand 5
A
228 236anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 140first strand
Strand 2
A
143 145anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
163 168first strand
Strand 2
A
241 246anti-parallel
Strand 3
A
201 205anti-parallel
Strand 4
A
208 212anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 53first strand
Strand 2
B
81 82parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
76 78first strand
Strand 2
B
110 117anti-parallel
Strand 3
B
255 260anti-parallel
Strand 4
B
174 183anti-parallel
Strand 5
B
250 253anti-parallel
Strand 6
B
150 152anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
76 78first strand
Strand 2
B
110 117anti-parallel
Strand 3
B
255 260anti-parallel
Strand 4
B
174 183anti-parallel
Strand 5
B
228 236anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
135 140first strand
Strand 2
B
143 145anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
163 168first strand
Strand 2
B
241 246anti-parallel
Strand 3
B
201 204anti-parallel
Strand 4
B
209 212anti-parallel
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