Analysis of interatomic Contacts of Structural Units in PDB entry:
7JPD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7JPD entry

There are 6 chains in PDB entry 7JPD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 2	PRO 324
a	GLY 330	PRO 489
B	SER 2	PRO 324
b	GLY 330	PRO 489
C	SER 2	PRO 324
c	GLY 330	GLY 349

There are 42 helices in PDB entry 7JPD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	58	65	Right-handed alpha
Helix 2	AA2	A	99	107	Right-handed alpha
Helix 3	AA3	A	120	125	Right-handed alpha
Helix 4	AA4	A	186	195	Right-handed alpha
Helix 5	AA5	a	366	387	Right-handed alpha
Helix 6	AA6	a	403	455	Right-handed alpha
Helix 7	AA7	a	474	484	Right-handed alpha
Helix 8	AA8	B	58	65	Right-handed alpha
Helix 9	AA9	B	99	108	Right-handed alpha
Helix 10	AB1	B	120	125	Right-handed alpha
Helix 11	AB2	B	186	195	Right-handed alpha
Helix 12	AB3	b	366	387	Right-handed alpha
Helix 13	AB4	b	403	455	Right-handed alpha
Helix 14	AB5	b	474	484	Right-handed alpha
Helix 15	AB6	C	58	65	Right-handed alpha
Helix 16	AB7	C	99	108	Right-handed alpha
Helix 17	AB8	C	120	125	Right-handed alpha
Helix 18	AB9	C	186	195	Right-handed alpha
Helix 19	AC1	c	366	387	Right-handed alpha
Helix 20	AC2	c	403	455	Right-handed alpha
Helix 21	AC3	c	474	484	Right-handed alpha
Helix 22	AC4	D	58	65	Right-handed alpha
Helix 23	AC5	D	99	107	Right-handed alpha
Helix 24	AC6	D	120	125	Right-handed alpha
Helix 25	AC7	D	186	195	Right-handed alpha
Helix 26	AC8	d	366	387	Right-handed alpha
Helix 27	AC9	d	403	456	Right-handed alpha
Helix 28	AD1	d	474	484	Right-handed alpha
Helix 29	AD2	E	58	65	Right-handed alpha
Helix 30	AD3	E	99	107	Right-handed alpha
Helix 31	AD4	E	120	125	Right-handed alpha
Helix 32	AD5	E	186	195	Right-handed alpha
Helix 33	AD6	e	366	387	Right-handed alpha
Helix 34	AD7	e	403	455	Right-handed alpha
Helix 35	AD8	e	474	484	Right-handed alpha
Helix 36	AD9	F	58	65	Right-handed alpha
Helix 37	AE1	F	99	107	Right-handed alpha
Helix 38	AE2	F	120	125	Right-handed alpha
Helix 39	AE3	F	186	195	Right-handed alpha
Helix 40	AE4	f	366	387	Right-handed alpha
Helix 41	AE5	f	403	455	Right-handed alpha
Helix 42	AE6	f	474	484	Right-handed alpha

There are 66 sheets in PDB entry 7JPD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9, AG1, AG2, AG3, AG4, AG5, AG6, AG7, AG8, AG9, AH1, AH2, AH3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	360	365	first strand
Strand 2	a	351	357	anti-parallel
Strand 3	A	4	9	anti-parallel
Strand 4	a	466	469	anti-parallel
Strand 5	a	459	461	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	18	first strand
Strand 2	A	26	27	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	33	first strand
Strand 2	A	315	317	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	36	first strand
Strand 2	A	294	295	parallel
Strand 3	A	307	308	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	46	first strand
Strand 2	A	273	279	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	54	first strand
Strand 2	A	81	83	parallel
Strand 3	A	267	269	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	78	first strand
Strand 2	A	110	117	anti-parallel
Strand 3	A	255	261	anti-parallel
Strand 4	A	174	183	anti-parallel
Strand 5	A	250	253	anti-parallel
Strand 6	A	150	152	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	78	first strand
Strand 2	A	110	117	anti-parallel
Strand 3	A	255	261	anti-parallel
Strand 4	A	174	183	anti-parallel
Strand 5	A	228	236	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	135	140	first strand
Strand 2	A	143	145	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	163	168	first strand
Strand 2	A	241	246	anti-parallel
Strand 3	A	201	204	anti-parallel
Strand 4	A	209	212	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	286	287	first strand
Strand 2	A	281	283	anti-parallel
Strand 3	A	302	303	anti-parallel
Strand 4	a	393	394	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	360	365	first strand
Strand 2	b	351	357	anti-parallel
Strand 3	B	4	9	anti-parallel
Strand 4	b	466	469	anti-parallel
Strand 5	b	459	461	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	18	first strand
Strand 2	B	26	28	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	31	33	first strand
Strand 2	B	315	317	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	36	first strand
Strand 2	B	294	295	parallel
Strand 3	B	307	308	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	42	46	first strand
Strand 2	B	273	279	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	54	first strand
Strand 2	B	81	83	parallel
Strand 3	B	267	269	parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	78	first strand
Strand 2	B	110	116	anti-parallel
Strand 3	B	256	261	anti-parallel
Strand 4	B	174	183	anti-parallel
Strand 5	B	250	253	anti-parallel
Strand 6	B	150	152	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	78	first strand
Strand 2	B	110	116	anti-parallel
Strand 3	B	256	261	anti-parallel
Strand 4	B	174	183	anti-parallel
Strand 5	B	228	236	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	135	140	first strand
Strand 2	B	143	145	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	163	168	first strand
Strand 2	B	241	246	anti-parallel
Strand 3	B	201	204	anti-parallel
Strand 4	B	209	212	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	281	282	first strand
Strand 2	B	302	303	anti-parallel
Strand 3	b	393	394	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	360	365	first strand
Strand 2	c	351	357	anti-parallel
Strand 3	C	4	9	anti-parallel
Strand 4	c	466	469	anti-parallel
Strand 5	c	459	461	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	17	18	first strand
Strand 2	C	26	27	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	31	33	first strand
Strand 2	C	315	317	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	36	first strand
Strand 2	C	294	295	parallel
Strand 3	C	307	308	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	46	first strand
Strand 2	C	273	279	parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	54	first strand
Strand 2	C	81	83	parallel
Strand 3	C	267	269	parallel

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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	76	78	first strand
Strand 2	C	110	117	anti-parallel
Strand 3	C	255	261	anti-parallel
Strand 4	C	174	183	anti-parallel
Strand 5	C	250	253	anti-parallel
Strand 6	C	150	152	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	76	78	first strand
Strand 2	C	110	117	anti-parallel
Strand 3	C	255	261	anti-parallel
Strand 4	C	174	183	anti-parallel
Strand 5	C	228	236	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	135	140	first strand
Strand 2	C	143	145	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	163	168	first strand
Strand 2	C	241	246	anti-parallel
Strand 3	C	201	204	anti-parallel
Strand 4	C	209	212	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	281	282	first strand
Strand 2	C	302	303	anti-parallel
Strand 3	c	393	394	anti-parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	360	365	first strand
Strand 2	d	351	357	anti-parallel
Strand 3	D	4	9	anti-parallel
Strand 4	d	466	469	anti-parallel
Strand 5	d	459	461	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	17	18	first strand
Strand 2	D	26	27	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	31	33	first strand
Strand 2	D	315	317	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	35	36	first strand
Strand 2	D	294	295	parallel
Strand 3	D	307	308	parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	42	46	first strand
Strand 2	D	273	279	parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	52	54	first strand
Strand 2	D	81	83	parallel
Strand 3	D	267	269	parallel

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There are 6 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	76	78	first strand
Strand 2	D	110	117	anti-parallel
Strand 3	D	255	261	anti-parallel
Strand 4	D	174	183	anti-parallel
Strand 5	D	250	253	anti-parallel
Strand 6	D	150	152	anti-parallel

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There are 5 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	76	78	first strand
Strand 2	D	110	117	anti-parallel
Strand 3	D	255	261	anti-parallel
Strand 4	D	174	183	anti-parallel
Strand 5	D	228	236	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	135	140	first strand
Strand 2	D	143	145	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	163	168	first strand
Strand 2	D	241	246	anti-parallel
Strand 3	D	201	204	anti-parallel
Strand 4	D	209	212	anti-parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	281	282	first strand
Strand 2	D	302	303	anti-parallel
Strand 3	d	393	394	anti-parallel

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There are 5 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	360	365	first strand
Strand 2	e	351	357	anti-parallel
Strand 3	E	4	9	anti-parallel
Strand 4	e	466	469	anti-parallel
Strand 5	e	459	461	anti-parallel

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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	17	18	first strand
Strand 2	E	26	27	anti-parallel

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There are 2 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	31	33	first strand
Strand 2	E	315	317	anti-parallel

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There are 3 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	35	36	first strand
Strand 2	E	294	295	parallel
Strand 3	E	307	308	parallel

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There are 2 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	42	45	first strand
Strand 2	E	273	278	parallel

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There are 3 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	52	54	first strand
Strand 2	E	81	83	parallel
Strand 3	E	267	269	parallel

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There are 6 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	76	78	first strand
Strand 2	E	110	117	anti-parallel
Strand 3	E	255	261	anti-parallel
Strand 4	E	174	183	anti-parallel
Strand 5	E	250	253	anti-parallel
Strand 6	E	150	152	anti-parallel

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There are 5 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	76	78	first strand
Strand 2	E	110	117	anti-parallel
Strand 3	E	255	261	anti-parallel
Strand 4	E	174	183	anti-parallel
Strand 5	E	228	236	anti-parallel

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There are 2 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	135	140	first strand
Strand 2	E	143	145	anti-parallel

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There are 4 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	163	168	first strand
Strand 2	E	241	246	anti-parallel
Strand 3	E	201	204	anti-parallel
Strand 4	E	209	212	anti-parallel

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There are 3 strands in AG1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	281	282	first strand
Strand 2	E	302	303	anti-parallel
Strand 3	e	393	394	anti-parallel

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There are 5 strands in AG2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	360	365	first strand
Strand 2	f	351	357	anti-parallel
Strand 3	F	4	9	anti-parallel
Strand 4	f	466	469	anti-parallel
Strand 5	f	459	461	anti-parallel

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There are 2 strands in AG3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	17	18	first strand
Strand 2	F	26	27	anti-parallel

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There are 2 strands in AG4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	31	33	first strand
Strand 2	F	315	317	anti-parallel

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There are 3 strands in AG5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	35	36	first strand
Strand 2	F	294	295	parallel
Strand 3	F	307	308	parallel

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There are 2 strands in AG6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	42	46	first strand
Strand 2	F	273	279	parallel

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There are 3 strands in AG7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	52	54	first strand
Strand 2	F	81	83	parallel
Strand 3	F	267	269	parallel

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There are 5 strands in AG8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	110	117	first strand
Strand 2	F	255	261	anti-parallel
Strand 3	F	174	183	anti-parallel
Strand 4	F	250	253	anti-parallel
Strand 5	F	150	152	anti-parallel

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There are 4 strands in AG9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	110	117	first strand
Strand 2	F	255	261	anti-parallel
Strand 3	F	174	183	anti-parallel
Strand 4	F	228	236	anti-parallel

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There are 2 strands in AH1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	135	140	first strand
Strand 2	F	143	145	anti-parallel

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There are 4 strands in AH2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	163	168	first strand
Strand 2	F	241	246	anti-parallel
Strand 3	F	201	204	anti-parallel
Strand 4	F	209	212	anti-parallel

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There are 4 strands in AH3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	286	287	first strand
Strand 2	F	281	283	anti-parallel
Strand 3	F	302	303	anti-parallel
Strand 4	f	393	394	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7JPD

Analysis of interatomic Contacts of Structural Units in PDB entry:
7JPD