Analysis of interatomic Contacts of Structural Units in PDB entry:
7JPJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7JPJ entry

There are 2 chains in PDB entry 7JPJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 39VAL 475
B
 THR 39VAL 475
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 7JPJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
48 59Right-handed alpha
Helix 2
AA2
A
69 81Right-handed alpha
Helix 3
AA4
A
100 109Right-handed alpha
Helix 4
AA5
A
117 127Right-handed alpha
Helix 5
AA7
A
145 151Right-handed alpha
Helix 6
AA8
A
159 170Right-handed alpha
Helix 7
AA9
A
213 218Right-handed alpha
Helix 8
AB1
A
220 228Right-handed alpha
Helix 9
AB2
A
244 258Right-handed alpha
Helix 10
AB3
A
259 261Right-handed 310
Helix 11
AB4
A
287 305Right-handed alpha
Helix 12
AB5
A
316 323Right-handed alpha
Helix 13
AB6
A
355 359Right-handed alpha
Helix 14
AB9
A
465 469Right-handed alpha
Helix 15
AC1
B
49 58Right-handed alpha
Helix 16
AC2
B
69 81Right-handed alpha
Helix 17
AC4
B
100 109Right-handed alpha
Helix 18
AC5
B
118 127Right-handed alpha
Helix 19
AC7
B
145 151Right-handed alpha
Helix 20
AC8
B
160 170Right-handed alpha
Helix 21
AC9
B
213 217Right-handed alpha
Helix 22
AD1
B
220 228Right-handed alpha
Helix 23
AD2
B
245 260Right-handed alpha
Helix 24
AD3
B
287 304Right-handed alpha
Helix 25
AD4
B
316 322Right-handed alpha
Helix 26
AD5
B
355 360Right-handed alpha
Helix 27
AD8
B
464 469Right-handed alpha
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There are 6 sheets in PDB entry 7JPJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA5, AA6, AA7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
366 369first strand
Strand 2
A
419 424anti-parallel
Strand 3
A
324 335anti-parallel
Strand 4
A
343 347anti-parallel
Strand 5
A
382 388parallel
Strand 6
A
411 414anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
366 369first strand
Strand 2
A
421 424anti-parallel
Strand 3
A
324 335anti-parallel
Strand 4
A
64 68anti-parallel
Strand 5
A
447 451parallel
Strand 6
A
454 460anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
176 182first strand
Strand 2
A
231 236parallel
Strand 3
A
267 269parallel
Strand 4
A
310 313parallel
Strand 5
A
88 93parallel
Strand 6
A
112 115parallel
Strand 7
A
134 137parallel
Strand 8
A
154 157parallel
Strand 9
A
176 182parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
366 369first strand
Strand 2
B
419 424anti-parallel
Strand 3
B
324 335anti-parallel
Strand 4
B
343 347anti-parallel
Strand 5
B
382 388parallel
Strand 6
B
411 414anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
366 369first strand
Strand 2
B
421 424anti-parallel
Strand 3
B
324 335anti-parallel
Strand 4
B
64 68anti-parallel
Strand 5
B
447 451parallel
Strand 6
B
454 460anti-parallel
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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
176 182first strand
Strand 2
B
231 236parallel
Strand 3
B
267 269parallel
Strand 4
B
310 313parallel
Strand 5
B
88 93parallel
Strand 6
B
112 115parallel
Strand 7
B
134 136parallel
Strand 8
B
154 157parallel
Strand 9
B
176 182parallel
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