Analysis of interatomic Contacts of Structural Units in PDB entry:
7JPK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7JPK entry

There are 3 chains in PDB entry 7JPK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 37	GLY 1434
E	MET 1	GLU 219
F	PHE 27	CYS 1074

There are 94 helices in PDB entry 7JPK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	53	70	Right-handed alpha
Helix 2	AA2	A	80	86	Right-handed alpha
Helix 3	AA3	A	92	106	Right-handed alpha
Helix 4	AA4	A	123	141	Right-handed alpha
Helix 5	AA5	A	163	172	Right-handed 310
Helix 6	AA6	A	173	179	Right-handed alpha
Helix 7	AA7	A	179	193	Right-handed alpha
Helix 8	AA8	A	196	219	Right-handed alpha
Helix 9	AA9	A	277	290	Right-handed alpha
Helix 10	AB1	A	293	306	Right-handed alpha
Helix 11	AB2	A	310	322	Right-handed alpha
Helix 12	AB3	A	322	346	Right-handed alpha
Helix 13	AB4	A	434	450	Right-handed alpha
Helix 14	AB5	A	457	467	Right-handed alpha
Helix 15	AB6	A	468	478	Right-handed alpha
Helix 16	AB7	A	480	486	Right-handed alpha
Helix 17	AB8	A	499	515	Right-handed alpha
Helix 18	AB9	A	520	529	Right-handed alpha
Helix 19	AC1	A	530	534	Right-handed 310
Helix 20	AC2	A	535	540	Right-handed alpha
Helix 21	AC3	A	542	548	Right-handed alpha
Helix 22	AC4	A	548	581	Right-handed alpha
Helix 23	AC5	A	599	613	Right-handed alpha
Helix 24	AC6	A	615	627	Right-handed alpha
Helix 25	AC7	A	634	636	Right-handed 310
Helix 26	AC8	A	637	670	Right-handed alpha
Helix 27	AC9	A	798	818	Right-handed alpha
Helix 28	AD1	A	828	842	Right-handed alpha
Helix 29	AD2	A	868	882	Right-handed alpha
Helix 30	AD3	A	892	899	Right-handed 310
Helix 31	AD4	A	903	905	Right-handed 310
Helix 32	AD5	A	906	911	Right-handed alpha
Helix 33	AD6	A	911	926	Right-handed alpha
Helix 34	AD7	A	929	951	Right-handed alpha
Helix 35	AD8	A	977	979	Right-handed 310
Helix 36	AD9	A	999	1012	Right-handed alpha
Helix 37	AE1	A	1015	1024	Right-handed alpha
Helix 38	AE2	A	1038	1040	Right-handed 310
Helix 39	AE3	A	1041	1052	Right-handed alpha
Helix 40	AE4	A	1055	1072	Right-handed alpha
Helix 41	AE5	A	1083	1095	Right-handed alpha
Helix 42	AE6	A	1105	1116	Right-handed alpha
Helix 43	AE7	A	1117	1136	Right-handed alpha
Helix 44	AE8	A	1151	1173	Right-handed alpha
Helix 45	AE9	A	1176	1179	Right-handed 310
Helix 46	AF1	A	1180	1205	Right-handed alpha
Helix 47	AF2	A	1234	1238	Right-handed 310
Helix 48	AF3	A	1240	1249	Right-handed 310
Helix 49	AF4	A	1250	1267	Right-handed alpha
Helix 50	AF5	A	1270	1289	Right-handed alpha
Helix 51	AF6	A	1308	1321	Right-handed alpha
Helix 52	AF7	A	1324	1332	Right-handed alpha
Helix 53	AF8	A	1356	1382	Right-handed alpha
Helix 54	AF9	A	1383	1388	Right-handed alpha
Helix 55	AG1	A	1395	1410	Right-handed alpha
Helix 56	AG2	A	1423	1429	Right-handed 310
Helix 57	AG3	E	6	27	Right-handed alpha
Helix 58	AG4	E	105	128	Right-handed alpha
Helix 59	AG5	E	133	135	Right-handed 310
Helix 60	AG6	E	136	163	Right-handed alpha
Helix 61	AG7	E	180	204	Right-handed alpha
Helix 62	AG8	F	29	53	Right-handed alpha
Helix 63	AG9	F	53	63	Right-handed alpha
Helix 64	AH1	F	76	96	Right-handed alpha
Helix 65	AH2	F	96	110	Right-handed alpha
Helix 66	AH3	F	183	188	Right-handed alpha
Helix 67	AH4	F	191	202	Right-handed alpha
Helix 68	AH5	F	239	242	Right-handed 310
Helix 69	AH6	F	243	251	Right-handed alpha
Helix 70	AH7	F	263	267	Right-handed 310
Helix 71	AH8	F	268	283	Right-handed alpha
Helix 72	AH9	F	313	325	Right-handed alpha
Helix 73	AI1	F	334	346	Right-handed alpha
Helix 74	AI2	F	371	379	Right-handed alpha
Helix 75	AI3	F	398	408	Right-handed alpha
Helix 76	AI4	F	417	419	Right-handed 310
Helix 77	AI5	F	420	426	Right-handed alpha
Helix 78	AI6	F	427	433	Right-handed alpha
Helix 79	AI7	F	433	438	Right-handed alpha
Helix 80	AI8	F	439	444	Right-handed 310
Helix 81	AI9	F	496	500	Right-handed alpha
Helix 82	AJ1	F	562	566	Right-handed 310
Helix 83	AJ2	F	571	582	Right-handed alpha
Helix 84	AJ3	F	640	650	Right-handed alpha
Helix 85	AJ4	F	651	654	Right-handed 310
Helix 86	AJ5	F	655	660	Right-handed alpha
Helix 87	AJ6	F	678	693	Right-handed alpha
Helix 88	AJ7	F	701	722	Right-handed alpha
Helix 89	AJ8	F	748	753	Right-handed alpha
Helix 90	AJ9	F	764	773	Right-handed alpha
Helix 91	AK1	F	820	830	Right-handed alpha
Helix 92	AK2	F	877	881	Right-handed 310
Helix 93	AK3	F	882	892	Right-handed alpha
Helix 94	AK4	F	1045	1050	Right-handed alpha

There are 18 sheets in PDB entry 7JPK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	225	228	first strand
Strand 2	A	259	262	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	955	957	first strand
Strand 2	A	990	992	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	971	975	first strand
Strand 2	A	983	987	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	34	36	first strand
Strand 2	E	175	177	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	48	50	first strand
Strand 2	E	56	59	anti-parallel
Strand 3	E	79	81	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	68	72	first strand
Strand 2	F	632	636	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	124	125	first strand
Strand 2	F	144	145	parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	127	128	first strand
Strand 2	F	167	169	parallel
Strand 3	F	217	220	anti-parallel
Strand 4	F	208	212	anti-parallel
Strand 5	F	486	495	anti-parallel
Strand 6	F	460	469	anti-parallel
Strand 7	F	447	448	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	127	128	first strand
Strand 2	F	167	169	parallel
Strand 3	F	217	220	anti-parallel
Strand 4	F	208	212	anti-parallel
Strand 5	F	486	495	anti-parallel
Strand 6	F	460	469	anti-parallel
Strand 7	F	452	453	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	152	153	first strand
Strand 2	F	160	161	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	300	302	first strand
Strand 2	F	290	296	anti-parallel
Strand 3	F	255	261	parallel
Strand 4	F	358	364	parallel
Strand 5	F	384	391	parallel
Strand 6	F	411	415	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	523	525	first strand
Strand 2	F	513	517	anti-parallel
Strand 3	F	621	626	anti-parallel
Strand 4	F	602	613	anti-parallel
Strand 5	F	586	595	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	540	541	first strand
Strand 2	F	910	911	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	661	664	first strand
Strand 2	F	743	746	anti-parallel
Strand 3	F	736	739	anti-parallel
Strand 4	F	813	819	anti-parallel
Strand 5	F	732	734	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	661	664	first strand
Strand 2	F	743	746	anti-parallel
Strand 3	F	736	739	anti-parallel
Strand 4	F	813	819	anti-parallel
Strand 5	F	795	800	anti-parallel
Strand 6	F	777	779	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	803	804	first strand
Strand 2	F	809	810	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	862	864	first strand
Strand 2	F	851	857	anti-parallel
Strand 3	F	1016	1022	anti-parallel
Strand 4	F	1004	1011	anti-parallel
Strand 5	F	992	997	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	895	907	first strand
Strand 2	F	975	986	anti-parallel
Strand 3	F	1039	1041	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7JPK

Analysis of interatomic Contacts of Structural Units in PDB entry:
7JPK