Analysis of interatomic Contacts of Structural Units in PDB entry:
7JPL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7JPL entry

There are 3 chains in PDB entry 7JPL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 37	GLY 1434
E	MET 1	GLU 219
F	PHE 27	CYS 1074

There are 96 helices in PDB entry 7JPL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	52	59	Right-handed alpha
Helix 2	AA2	A	60	70	Right-handed alpha
Helix 3	AA3	A	80	88	Right-handed alpha
Helix 4	AA4	A	88	107	Right-handed alpha
Helix 5	AA5	A	123	141	Right-handed alpha
Helix 6	AA6	A	164	170	Right-handed 310
Helix 7	AA7	A	171	179	Right-handed alpha
Helix 8	AA8	A	179	187	Right-handed alpha
Helix 9	AA9	A	196	218	Right-handed alpha
Helix 10	AB1	A	277	290	Right-handed alpha
Helix 11	AB2	A	293	305	Right-handed alpha
Helix 12	AB3	A	310	320	Right-handed alpha
Helix 13	AB4	A	322	343	Right-handed alpha
Helix 14	AB5	A	433	436	Right-handed 310
Helix 15	AB6	A	437	450	Right-handed alpha
Helix 16	AB7	A	457	477	Right-handed alpha
Helix 17	AB8	A	482	487	Right-handed alpha
Helix 18	AB9	A	496	512	Right-handed alpha
Helix 19	AC1	A	522	530	Right-handed alpha
Helix 20	AC2	A	531	535	Right-handed 310
Helix 21	AC3	A	536	541	Right-handed alpha
Helix 22	AC4	A	542	548	Right-handed alpha
Helix 23	AC5	A	548	556	Right-handed alpha
Helix 24	AC6	A	561	581	Right-handed alpha
Helix 25	AC7	A	599	612	Right-handed alpha
Helix 26	AC8	A	615	626	Right-handed alpha
Helix 27	AC9	A	633	636	Right-handed 310
Helix 28	AD1	A	637	647	Right-handed alpha
Helix 29	AD2	A	647	656	Right-handed alpha
Helix 30	AD3	A	657	662	Right-handed alpha
Helix 31	AD4	A	663	673	Right-handed alpha
Helix 32	AD5	A	798	818	Right-handed alpha
Helix 33	AD6	A	826	853	Right-handed alpha
Helix 34	AD7	A	870	881	Right-handed alpha
Helix 35	AD8	A	894	899	Right-handed alpha
Helix 36	AD9	A	900	901	Right-handed 310
Helix 37	AE1	A	902	907	Right-handed 310
Helix 38	AE2	A	912	928	Right-handed alpha
Helix 39	AE3	A	933	950	Right-handed alpha
Helix 40	AE4	A	977	979	Right-handed 310
Helix 41	AE5	A	999	1012	Right-handed alpha
Helix 42	AE6	A	1015	1024	Right-handed alpha
Helix 43	AE7	A	1038	1042	Right-handed 310
Helix 44	AE8	A	1043	1052	Right-handed alpha
Helix 45	AE9	A	1055	1068	Right-handed alpha
Helix 46	AF1	A	1083	1094	Right-handed alpha
Helix 47	AF2	A	1105	1117	Right-handed alpha
Helix 48	AF3	A	1117	1136	Right-handed alpha
Helix 49	AF4	A	1151	1173	Right-handed alpha
Helix 50	AF5	A	1180	1204	Right-handed alpha
Helix 51	AF6	A	1232	1235	Right-handed 310
Helix 52	AF7	A	1236	1241	Right-handed alpha
Helix 53	AF8	A	1242	1249	Right-handed 310
Helix 54	AF9	A	1250	1266	Right-handed alpha
Helix 55	AG1	A	1267	1289	Right-handed alpha
Helix 56	AG2	A	1308	1322	Right-handed alpha
Helix 57	AG3	A	1324	1332	Right-handed alpha
Helix 58	AG4	A	1356	1382	Right-handed alpha
Helix 59	AG5	A	1383	1388	Right-handed alpha
Helix 60	AG6	A	1395	1410	Right-handed alpha
Helix 61	AG7	A	1423	1429	Right-handed 310
Helix 62	AG8	A	1430	1434	Right-handed 310
Helix 63	AG9	E	6	27	Right-handed alpha
Helix 64	AH1	E	105	127	Right-handed alpha
Helix 65	AH2	E	136	164	Right-handed alpha
Helix 66	AH3	E	181	204	Right-handed alpha
Helix 67	AH4	F	29	53	Right-handed alpha
Helix 68	AH5	F	53	65	Right-handed alpha
Helix 69	AH6	F	76	110	Right-handed alpha
Helix 70	AH7	F	178	188	Right-handed alpha
Helix 71	AH8	F	191	202	Right-handed alpha
Helix 72	AH9	F	243	250	Right-handed alpha
Helix 73	AI1	F	268	283	Right-handed alpha
Helix 74	AI2	F	313	325	Right-handed alpha
Helix 75	AI3	F	334	346	Right-handed alpha
Helix 76	AI4	F	371	379	Right-handed alpha
Helix 77	AI5	F	398	406	Right-handed alpha
Helix 78	AI6	F	420	425	Right-handed alpha
Helix 79	AI7	F	426	430	Right-handed 310
Helix 80	AI8	F	433	439	Right-handed alpha
Helix 81	AI9	F	440	444	Right-handed 310
Helix 82	AJ1	F	496	500	Right-handed alpha
Helix 83	AJ2	F	542	546	Right-handed 310
Helix 84	AJ3	F	571	581	Right-handed alpha
Helix 85	AJ4	F	640	650	Right-handed alpha
Helix 86	AJ5	F	652	654	Right-handed 310
Helix 87	AJ6	F	655	660	Right-handed alpha
Helix 88	AJ7	F	678	693	Right-handed alpha
Helix 89	AJ8	F	701	722	Right-handed alpha
Helix 90	AJ9	F	748	753	Right-handed alpha
Helix 91	AK1	F	760	763	Right-handed 310
Helix 92	AK2	F	764	773	Right-handed alpha
Helix 93	AK3	F	820	830	Right-handed alpha
Helix 94	AK4	F	877	881	Right-handed 310
Helix 95	AK5	F	882	892	Right-handed alpha
Helix 96	AK6	F	1045	1050	Right-handed alpha

There are 16 sheets in PDB entry 7JPL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	225	228	first strand
Strand 2	A	259	262	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	955	956	first strand
Strand 2	A	991	992	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	971	975	first strand
Strand 2	A	983	987	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	79	81	first strand
Strand 2	E	56	59	anti-parallel
Strand 3	E	48	51	anti-parallel
Strand 4	E	33	35	anti-parallel
Strand 5	E	176	177	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	68	72	first strand
Strand 2	F	632	636	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	124	125	first strand
Strand 2	F	144	145	parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	127	128	first strand
Strand 2	F	167	169	parallel
Strand 3	F	217	220	anti-parallel
Strand 4	F	208	212	anti-parallel
Strand 5	F	486	495	anti-parallel
Strand 6	F	460	469	anti-parallel
Strand 7	F	447	448	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	127	128	first strand
Strand 2	F	167	169	parallel
Strand 3	F	217	220	anti-parallel
Strand 4	F	208	212	anti-parallel
Strand 5	F	486	495	anti-parallel
Strand 6	F	460	469	anti-parallel
Strand 7	F	452	453	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	152	153	first strand
Strand 2	F	160	161	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	300	302	first strand
Strand 2	F	290	296	anti-parallel
Strand 3	F	254	261	parallel
Strand 4	F	357	364	parallel
Strand 5	F	384	391	parallel
Strand 6	F	411	415	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	523	525	first strand
Strand 2	F	513	517	anti-parallel
Strand 3	F	621	626	anti-parallel
Strand 4	F	602	613	anti-parallel
Strand 5	F	586	595	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	661	663	first strand
Strand 2	F	744	746	anti-parallel
Strand 3	F	736	739	anti-parallel
Strand 4	F	813	819	anti-parallel
Strand 5	F	732	734	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	661	663	first strand
Strand 2	F	744	746	anti-parallel
Strand 3	F	736	739	anti-parallel
Strand 4	F	813	819	anti-parallel
Strand 5	F	795	800	anti-parallel
Strand 6	F	777	779	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	803	804	first strand
Strand 2	F	809	810	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	862	864	first strand
Strand 2	F	851	857	anti-parallel
Strand 3	F	1016	1022	anti-parallel
Strand 4	F	1004	1011	anti-parallel
Strand 5	F	993	997	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	895	907	first strand
Strand 2	F	975	986	anti-parallel
Strand 3	F	1039	1041	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7JPL

Analysis of interatomic Contacts of Structural Units in PDB entry:
7JPL