Analysis of interatomic Contacts of Structural Units in PDB entry:
7JPN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7JPN entry

There are 8 chains in PDB entry 7JPN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 3	GLY 415
B	GLN 4	GLU 380
C	ALA 2	LYS 370
D	MET 1	ALA 284
E	PRO 2	GLY 175
F	THR 2	PHE 168
G	ALA 9	VAL 151
H	ALA 193	ASP 226

There are 72 helices in PDB entry 7JPN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	55	58	Right-handed 310
Helix 2	AA2	A	64	67	Right-handed 310
Helix 3	AA3	A	85	99	Right-handed alpha
Helix 4	AA4	A	119	133	Right-handed alpha
Helix 5	AA5	A	144	152	Right-handed alpha
Helix 6	AA6	A	153	155	Right-handed 310
Helix 7	AA7	A	196	212	Right-handed alpha
Helix 8	AA8	A	219	231	Right-handed alpha
Helix 9	AA9	A	237	248	Right-handed alpha
Helix 10	AB1	A	273	278	Right-handed alpha
Helix 11	AB2	A	279	284	Right-handed alpha
Helix 12	AB3	A	285	288	Right-handed 310
Helix 13	AB4	A	295	307	Right-handed alpha
Helix 14	AB5	A	308	318	Right-handed alpha
Helix 15	AB6	A	323	327	Right-handed 310
Helix 16	AB7	A	330	355	Right-handed alpha
Helix 17	AB8	A	375	386	Right-handed alpha
Helix 18	AB9	A	387	392	Right-handed alpha
Helix 19	AC1	A	396	403	Right-handed alpha
Helix 20	AC2	A	404	410	Right-handed 310
Helix 21	AC3	B	81	94	Right-handed alpha
Helix 22	AC4	B	101	104	Right-handed 310
Helix 23	AC5	B	116	130	Right-handed alpha
Helix 24	AC6	B	141	150	Right-handed alpha
Helix 25	AC7	B	185	200	Right-handed alpha
Helix 26	AC8	B	209	221	Right-handed alpha
Helix 27	AC9	B	226	237	Right-handed alpha
Helix 28	AD1	B	256	264	Right-handed alpha
Helix 29	AD2	B	265	266	Right-handed 310
Helix 30	AD3	B	267	272	Right-handed 310
Helix 31	AD4	B	277	288	Right-handed alpha
Helix 32	AD5	B	292	300	Right-handed alpha
Helix 33	AD6	B	305	309	Right-handed 310
Helix 34	AD7	B	312	329	Right-handed alpha
Helix 35	AD8	B	334	338	Right-handed 310
Helix 36	AD9	B	352	365	Right-handed alpha
Helix 37	AE1	B	374	379	Right-handed alpha
Helix 38	AE2	C	359	366	Right-handed alpha
Helix 39	AE3	D	8	25	Right-handed alpha
Helix 40	AE4	D	38	40	Right-handed 310
Helix 41	AE5	D	47	51	Right-handed 310
Helix 42	AE6	D	63	69	Right-handed alpha
Helix 43	AE7	D	71	81	Right-handed alpha
Helix 44	AE8	D	105	115	Right-handed alpha
Helix 45	AE9	D	115	135	Right-handed alpha
Helix 46	AF1	D	171	187	Right-handed alpha
Helix 47	AF2	D	188	191	Right-handed 310
Helix 48	AF3	D	206	211	Right-handed alpha
Helix 49	AF4	D	228	233	Right-handed alpha
Helix 50	AF5	D	233	245	Right-handed alpha
Helix 51	AF6	D	246	280	Right-handed alpha
Helix 52	AF7	E	40	53	Right-handed alpha
Helix 53	AF8	E	63	83	Right-handed alpha
Helix 54	AF9	E	87	101	Right-handed alpha
Helix 55	AG1	E	122	149	Right-handed alpha
Helix 56	AG2	E	157	162	Right-handed alpha
Helix 57	AG3	E	167	171	Right-handed 310
Helix 58	AG4	F	5	20	Right-handed alpha
Helix 59	AG5	F	36	41	Right-handed alpha
Helix 60	AG6	F	43	47	Right-handed 310
Helix 61	AG7	F	80	97	Right-handed alpha
Helix 62	AG8	F	120	126	Right-handed alpha
Helix 63	AG9	F	127	167	Right-handed alpha
Helix 64	AH1	G	15	20	Right-handed 310
Helix 65	AH2	G	38	48	Right-handed alpha
Helix 66	AH3	G	50	59	Right-handed alpha
Helix 67	AH4	G	68	86	Right-handed alpha
Helix 68	AH5	G	90	97	Right-handed alpha
Helix 69	AH6	G	99	115	Right-handed alpha
Helix 70	AH7	G	120	147	Right-handed alpha
Helix 71	AH8	H	194	201	Right-handed alpha
Helix 72	AH9	H	202	207	Right-handed alpha

There are 22 sheets in PDB entry 7JPN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	32	first strand
Strand 2	A	16	21	anti-parallel
Strand 3	A	8	12	anti-parallel
Strand 4	A	110	114	parallel
Strand 5	A	139	143	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	62	first strand
Strand 2	A	35	37	anti-parallel
Strand 3	A	73	75	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	78	79	first strand
Strand 2	A	82	83	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	184	185	first strand
Strand 2	A	175	181	anti-parallel
Strand 3	A	191	193	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	184	185	first strand
Strand 2	A	175	181	anti-parallel
Strand 3	A	165	169	anti-parallel
Strand 4	A	319	322	parallel
Strand 5	A	367	368	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	254	259	first strand
Strand 2	A	266	271	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	32	first strand
Strand 2	B	18	22	anti-parallel
Strand 3	B	8	13	anti-parallel
Strand 4	B	106	111	parallel
Strand 5	B	135	140	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	74	75	first strand
Strand 2	B	78	79	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	173	174	first strand
Strand 2	B	164	170	anti-parallel
Strand 3	B	180	182	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	173	174	first strand
Strand 2	B	164	170	anti-parallel
Strand 3	B	154	159	anti-parallel
Strand 4	B	301	304	parallel
Strand 5	B	344	345	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	242	245	first strand
Strand 2	B	251	254	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	5	first strand
Strand 2	C	353	358	anti-parallel
Strand 3	C	344	349	anti-parallel
Strand 4	C	329	336	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	14	16	first strand
Strand 2	C	22	25	anti-parallel
Strand 3	C	32	38	anti-parallel
Strand 4	C	41	48	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	55	61	first strand
Strand 2	C	66	71	anti-parallel
Strand 3	C	76	82	anti-parallel
Strand 4	C	85	91	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	99	104	first strand
Strand 2	C	110	115	anti-parallel
Strand 3	C	120	126	anti-parallel
Strand 4	C	131	137	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	145	150	first strand
Strand 2	C	156	161	anti-parallel
Strand 3	C	166	170	anti-parallel
Strand 4	C	194	198	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	205	210	first strand
Strand 2	C	216	221	anti-parallel
Strand 3	C	225	230	anti-parallel
Strand 4	C	236	241	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	247	252	first strand
Strand 2	C	257	262	anti-parallel
Strand 3	C	268	273	anti-parallel
Strand 4	C	278	284	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	33	37	first strand
Strand 2	D	41	46	anti-parallel
Strand 3	D	54	60	anti-parallel
Strand 4	D	93	98	anti-parallel
Strand 5	D	84	85	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	142	144	first strand
Strand 2	D	151	156	anti-parallel
Strand 3	D	161	168	anti-parallel
Strand 4	D	220	227	anti-parallel
Strand 5	D	197	202	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	14	16	first strand
Strand 2	E	19	21	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	51	54	first strand
Strand 2	F	60	65	anti-parallel
Strand 3	F	69	74	anti-parallel
Strand 4	F	114	119	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7JPN

Analysis of interatomic Contacts of Structural Units in PDB entry:
7JPN