Analysis of interatomic Contacts of Structural Units in PDB entry:
7JPO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7JPO entry

There are 5 chains in PDB entry 7JPO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 486ASP 860
B
 LEU 239VAL 466
C
 THR 3TRP 708
D
 LEU 17SER 431
E
 GLU 5ASP 433
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are100 helices in PDB entry 7JPO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
487 496Right-handed alpha
Helix 2
AA2
A
507 523Right-handed alpha
Helix 3
AA3
A
539 557Right-handed alpha
Helix 4
AA4
A
577 588Right-handed alpha
Helix 5
AA5
A
593 605Right-handed alpha
Helix 6
AA6
A
621 626Right-handed 310
Helix 7
AA7
A
630 639Right-handed alpha
Helix 8
AA8
A
657 661Right-handed 310
Helix 9
AA9
A
682 694Right-handed alpha
Helix 10
AB1
A
701 716Right-handed alpha
Helix 11
AB2
A
718 736Right-handed alpha
Helix 12
AB3
A
747 760Right-handed alpha
Helix 13
AB4
A
762 769Right-handed alpha
Helix 14
AB5
A
771 789Right-handed alpha
Helix 15
AB6
A
795 810Right-handed alpha
Helix 16
AB7
A
815 829Right-handed alpha
Helix 17
AB8
A
850 859Right-handed alpha
Helix 18
AB9
B
240 248Right-handed alpha
Helix 19
AC1
B
270 276Right-handed alpha
Helix 20
AC2
B
283 289Right-handed alpha
Helix 21
AC3
B
297 307Right-handed alpha
Helix 22
AC4
B
319 330Right-handed alpha
Helix 23
AC5
B
347 359Right-handed alpha
Helix 24
AC6
B
368 383Right-handed alpha
Helix 25
AC7
B
402 414Right-handed alpha
Helix 26
AC8
B
428 433Right-handed 310
Helix 27
AC9
C
38 66Right-handed alpha
Helix 28
AD1
C
66 87Right-handed alpha
Helix 29
AD2
C
110 112Right-handed 310
Helix 30
AD3
C
113 129Right-handed alpha
Helix 31
AD4
C
137 141Right-handed 310
Helix 32
AD5
C
143 158Right-handed alpha
Helix 33
AD6
C
180 193Right-handed alpha
Helix 34
AD7
C
226 239Right-handed alpha
Helix 35
AD8
C
257 263Right-handed alpha
Helix 36
AD9
C
264 269Right-handed alpha
Helix 37
AE1
C
280 293Right-handed alpha
Helix 38
AE2
C
303 316Right-handed alpha
Helix 39
AE3
C
320 339Right-handed alpha
Helix 40
AE4
C
341 345Right-handed 310
Helix 41
AE5
C
347 357Right-handed alpha
Helix 42
AE6
C
359 368Right-handed alpha
Helix 43
AE7
C
369 378Right-handed alpha
Helix 44
AE8
C
380 390Right-handed alpha
Helix 45
AE9
C
390 426Right-handed alpha
Helix 46
AF1
C
434 444Right-handed alpha
Helix 47
AF2
C
451 461Right-handed alpha
Helix 48
AF3
C
464 482Right-handed alpha
Helix 49
AF4
C
487 500Right-handed alpha
Helix 50
AF5
C
548 566Right-handed alpha
Helix 51
AF6
C
569 573Right-handed 310
Helix 52
AF7
C
575 579Right-handed 310
Helix 53
AF8
C
583 592Right-handed alpha
Helix 54
AF9
C
594 605Right-handed alpha
Helix 55
AG1
C
627 637Right-handed alpha
Helix 56
AG2
C
644 660Right-handed alpha
Helix 57
AG3
C
675 690Right-handed alpha
Helix 58
AG4
D
18 29Right-handed alpha
Helix 59
AG5
D
40 57Right-handed alpha
Helix 60
AG6
D
72 87Right-handed alpha
Helix 61
AG7
D
87 93Right-handed alpha
Helix 62
AG8
D
106 118Right-handed alpha
Helix 63
AG9
D
120 125Right-handed alpha
Helix 64
AH1
D
131 141Right-handed alpha
Helix 65
AH2
D
161 164Right-handed 310
Helix 66
AH3
D
170 183Right-handed alpha
Helix 67
AH4
D
197 201Right-handed 310
Helix 68
AH5
D
203 210Right-handed alpha
Helix 69
AH6
D
222 234Right-handed alpha
Helix 70
AH7
D
242 258Right-handed alpha
Helix 71
AH8
D
259 273Right-handed alpha
Helix 72
AH9
D
275 288Right-handed alpha
Helix 73
AI1
D
298 310Right-handed alpha
Helix 74
AI2
D
312 320Right-handed alpha
Helix 75
AI3
D
322 339Right-handed alpha
Helix 76
AI4
D
345 360Right-handed alpha
Helix 77
AI5
D
368 382Right-handed alpha
Helix 78
AI6
D
407 417Right-handed alpha
Helix 79
AI7
D
422 431Right-handed alpha
Helix 80
AI8
E
12 23Right-handed alpha
Helix 81
AI9
E
42 54Right-handed alpha
Helix 82
AJ1
E
68 85Right-handed alpha
Helix 83
AJ2
E
98 111Right-handed alpha
Helix 84
AJ3
E
127 130Right-handed 310
Helix 85
AJ4
E
136 143Right-handed alpha
Helix 86
AJ5
E
143 149Right-handed alpha
Helix 87
AJ6
E
161 165Right-handed 310
Helix 88
AJ7
E
183 192Right-handed alpha
Helix 89
AJ8
E
200 216Right-handed alpha
Helix 90
AJ9
E
221 237Right-handed alpha
Helix 91
AK1
E
237 243Right-handed alpha
Helix 92
AK2
E
249 268Right-handed alpha
Helix 93
AK3
E
274 284Right-handed alpha
Helix 94
AK4
E
303 318Right-handed alpha
Helix 95
AK5
E
320 322Right-handed 310
Helix 96
AK6
E
323 328Right-handed alpha
Helix 97
AK7
E
358 370Right-handed alpha
Helix 98
AK8
E
377 390Right-handed alpha
Helix 99
AK9
E
412 423Right-handed alpha
Helix 100
AL1
E
427 432Right-handed alpha
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There are 8 sheets in PDB entry 7JPO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
565 569first strand
Strand 2
A
616 620parallel
Strand 3
A
648 652parallel
Strand 4
A
528 533parallel
Strand 5
A
674 677parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
793 794first strand
Strand 2
A
844 847anti-parallel
Strand 3
A
832 833anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
443 447first strand
Strand 2
B
310 314parallel
Strand 3
B
418 424parallel
Strand 4
B
388 392parallel
Strand 5
B
335 339parallel
Strand 6
C
10 13anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
133 136first strand
Strand 2
C
215 219parallel
Strand 3
C
246 252parallel
Strand 4
C
100 106parallel
Strand 5
C
271 277parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
95 100first strand
Strand 2
D
154 159parallel
Strand 3
D
187 193parallel
Strand 4
D
61 66parallel
Strand 5
D
214 216parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
385 387first strand
Strand 2
D
402 404anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
58 62first strand
Strand 2
E
120 125parallel
Strand 3
E
152 158parallel
Strand 4
E
32 36parallel
Strand 5
E
175 178parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
393 395first strand
Strand 2
E
407 409anti-parallel
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