Analysis of interatomic Contacts of Structural Units in PDB entry:
7JPP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7JPP entry

There are 5 chains in PDB entry 7JPP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 761ASP 860
B
 ASP 268GLU 574
C
 THR 3TRP 709
D
 LEU 17SER 431
E
 GLU 5ASP 433
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 93 helices in PDB entry 7JPP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
761 769Right-handed alpha
Helix 2
AA2
A
771 789Right-handed alpha
Helix 3
AA3
A
795 810Right-handed alpha
Helix 4
AA4
A
815 829Right-handed alpha
Helix 5
AA5
A
850 860Right-handed alpha
Helix 6
AA6
B
269 276Right-handed alpha
Helix 7
AA7
B
283 297Right-handed alpha
Helix 8
AA8
B
297 307Right-handed alpha
Helix 9
AA9
B
319 330Right-handed alpha
Helix 10
AB1
B
347 358Right-handed alpha
Helix 11
AB2
B
368 382Right-handed alpha
Helix 12
AB3
B
397 401Right-handed 310
Helix 13
AB4
B
402 414Right-handed alpha
Helix 14
AB5
B
428 432Right-handed 310
Helix 15
AB6
B
436 441Right-handed alpha
Helix 16
AB7
B
473 483Right-handed alpha
Helix 17
AB8
B
485 503Right-handed alpha
Helix 18
AB9
B
512 523Right-handed alpha
Helix 19
AC1
B
528 542Right-handed alpha
Helix 20
AC2
B
562 573Right-handed alpha
Helix 21
AC3
C
25 31Right-handed alpha
Helix 22
AC4
C
36 66Right-handed alpha
Helix 23
AC5
C
66 81Right-handed alpha
Helix 24
AC6
C
81 87Right-handed alpha
Helix 25
AC7
C
113 129Right-handed alpha
Helix 26
AC8
C
143 159Right-handed alpha
Helix 27
AC9
C
180 192Right-handed alpha
Helix 28
AD1
C
226 240Right-handed alpha
Helix 29
AD2
C
256 263Right-handed alpha
Helix 30
AD3
C
264 269Right-handed alpha
Helix 31
AD4
C
280 293Right-handed alpha
Helix 32
AD5
C
303 316Right-handed alpha
Helix 33
AD6
C
320 339Right-handed alpha
Helix 34
AD7
C
340 345Right-handed 310
Helix 35
AD8
C
347 357Right-handed alpha
Helix 36
AD9
C
359 368Right-handed alpha
Helix 37
AE1
C
369 378Right-handed alpha
Helix 38
AE2
C
380 390Right-handed alpha
Helix 39
AE3
C
390 426Right-handed alpha
Helix 40
AE4
C
434 445Right-handed alpha
Helix 41
AE5
C
451 462Right-handed alpha
Helix 42
AE6
C
464 482Right-handed alpha
Helix 43
AE7
C
487 501Right-handed alpha
Helix 44
AE8
C
550 568Right-handed alpha
Helix 45
AE9
C
570 574Right-handed 310
Helix 46
AF1
C
584 593Right-handed alpha
Helix 47
AF2
C
595 606Right-handed alpha
Helix 48
AF3
C
628 638Right-handed alpha
Helix 49
AF4
C
645 661Right-handed alpha
Helix 50
AF5
C
675 690Right-handed alpha
Helix 51
AF6
D
18 29Right-handed alpha
Helix 52
AF7
D
40 57Right-handed alpha
Helix 53
AF8
D
72 87Right-handed alpha
Helix 54
AF9
D
106 118Right-handed alpha
Helix 55
AG1
D
120 125Right-handed alpha
Helix 56
AG2
D
131 141Right-handed alpha
Helix 57
AG3
D
160 166Right-handed alpha
Helix 58
AG4
D
170 183Right-handed alpha
Helix 59
AG5
D
197 202Right-handed alpha
Helix 60
AG6
D
203 210Right-handed alpha
Helix 61
AG7
D
222 234Right-handed alpha
Helix 62
AG8
D
242 258Right-handed alpha
Helix 63
AG9
D
259 273Right-handed alpha
Helix 64
AH1
D
275 290Right-handed alpha
Helix 65
AH2
D
298 310Right-handed alpha
Helix 66
AH3
D
312 320Right-handed alpha
Helix 67
AH4
D
322 339Right-handed alpha
Helix 68
AH5
D
345 360Right-handed alpha
Helix 69
AH6
D
368 382Right-handed alpha
Helix 70
AH7
D
407 417Right-handed alpha
Helix 71
AH8
D
422 431Right-handed alpha
Helix 72
AH9
E
11 23Right-handed alpha
Helix 73
AI1
E
43 55Right-handed alpha
Helix 74
AI2
E
68 85Right-handed alpha
Helix 75
AI3
E
98 111Right-handed alpha
Helix 76
AI4
E
112 116Right-handed 310
Helix 77
AI5
E
126 131Right-handed 310
Helix 78
AI6
E
136 143Right-handed alpha
Helix 79
AI7
E
143 149Right-handed alpha
Helix 80
AI8
E
161 165Right-handed 310
Helix 81
AI9
E
183 192Right-handed alpha
Helix 82
AJ1
E
200 216Right-handed alpha
Helix 83
AJ2
E
221 232Right-handed alpha
Helix 84
AJ3
E
232 237Right-handed alpha
Helix 85
AJ4
E
237 243Right-handed alpha
Helix 86
AJ5
E
249 267Right-handed alpha
Helix 87
AJ6
E
274 284Right-handed alpha
Helix 88
AJ7
E
303 318Right-handed alpha
Helix 89
AJ8
E
323 329Right-handed alpha
Helix 90
AJ9
E
358 370Right-handed alpha
Helix 91
AK1
E
377 390Right-handed alpha
Helix 92
AK2
E
412 423Right-handed alpha
Helix 93
AK3
E
426 432Right-handed alpha
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There are 7 sheets in PDB entry 7JPP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
793 794first strand
Strand 2
A
844 847anti-parallel
Strand 3
A
832 833anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
443 447first strand
Strand 2
B
310 314parallel
Strand 3
B
418 424parallel
Strand 4
B
388 392parallel
Strand 5
B
335 339parallel
Strand 6
C
10 13anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
133 136first strand
Strand 2
C
215 219parallel
Strand 3
C
246 252parallel
Strand 4
C
100 106parallel
Strand 5
C
271 277parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
61 66first strand
Strand 2
D
187 193parallel
Strand 3
D
154 159parallel
Strand 4
D
95 100parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
385 387first strand
Strand 2
D
402 404anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
58 62first strand
Strand 2
E
120 125parallel
Strand 3
E
152 158parallel
Strand 4
E
32 37parallel
Strand 5
E
175 179parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
393 394first strand
Strand 2
E
408 409anti-parallel
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