Analysis of interatomic Contacts of Structural Units in PDB entry:
7JPQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7JPQ entry

There are 4 chains in PDB entry 7JPQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ASP 268GLU 571
C
 THR 3THR 707
D
 LEU 17SER 431
E
 ASN 6ASP 433
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 88 helices in PDB entry 7JPQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
269 276Right-handed alpha
Helix 2
AA2
B
284 292Right-handed alpha
Helix 3
AA3
B
297 307Right-handed alpha
Helix 4
AA4
B
319 330Right-handed alpha
Helix 5
AA5
B
347 359Right-handed alpha
Helix 6
AA6
B
368 379Right-handed alpha
Helix 7
AA7
B
402 414Right-handed alpha
Helix 8
AA8
B
428 433Right-handed 310
Helix 9
AA9
B
434 442Right-handed alpha
Helix 10
AB1
B
473 484Right-handed alpha
Helix 11
AB2
B
485 500Right-handed alpha
Helix 12
AB3
B
512 522Right-handed alpha
Helix 13
AB4
B
528 542Right-handed alpha
Helix 14
AB5
B
562 568Right-handed alpha
Helix 15
AB6
C
26 31Right-handed alpha
Helix 16
AB7
C
40 66Right-handed alpha
Helix 17
AB8
C
66 88Right-handed alpha
Helix 18
AB9
C
113 129Right-handed alpha
Helix 19
AC1
C
143 158Right-handed alpha
Helix 20
AC2
C
180 192Right-handed alpha
Helix 21
AC3
C
226 240Right-handed alpha
Helix 22
AC4
C
256 263Right-handed alpha
Helix 23
AC5
C
264 269Right-handed alpha
Helix 24
AC6
C
280 293Right-handed alpha
Helix 25
AC7
C
303 317Right-handed alpha
Helix 26
AC8
C
320 338Right-handed alpha
Helix 27
AC9
C
339 345Right-handed 310
Helix 28
AD1
C
347 357Right-handed alpha
Helix 29
AD2
C
359 369Right-handed alpha
Helix 30
AD3
C
369 378Right-handed alpha
Helix 31
AD4
C
382 390Right-handed alpha
Helix 32
AD5
C
390 426Right-handed alpha
Helix 33
AD6
C
434 445Right-handed alpha
Helix 34
AD7
C
450 462Right-handed alpha
Helix 35
AD8
C
464 482Right-handed alpha
Helix 36
AD9
C
487 498Right-handed alpha
Helix 37
AE1
C
548 567Right-handed alpha
Helix 38
AE2
C
569 573Right-handed 310
Helix 39
AE3
C
575 579Right-handed 310
Helix 40
AE4
C
583 592Right-handed alpha
Helix 41
AE5
C
599 604Right-handed alpha
Helix 42
AE6
C
605 609Right-handed 310
Helix 43
AE7
C
629 638Right-handed alpha
Helix 44
AE8
C
644 657Right-handed alpha
Helix 45
AE9
C
673 690Right-handed alpha
Helix 46
AF1
D
18 29Right-handed alpha
Helix 47
AF2
D
40 57Right-handed alpha
Helix 48
AF3
D
72 86Right-handed alpha
Helix 49
AF4
D
87 92Right-handed alpha
Helix 50
AF5
D
106 118Right-handed alpha
Helix 51
AF6
D
131 142Right-handed alpha
Helix 52
AF7
D
160 165Right-handed alpha
Helix 53
AF8
D
170 180Right-handed alpha
Helix 54
AF9
D
197 201Right-handed 310
Helix 55
AG1
D
203 210Right-handed alpha
Helix 56
AG2
D
222 234Right-handed alpha
Helix 57
AG3
D
242 258Right-handed alpha
Helix 58
AG4
D
259 271Right-handed alpha
Helix 59
AG5
D
275 288Right-handed alpha
Helix 60
AG6
D
298 310Right-handed alpha
Helix 61
AG7
D
312 321Right-handed alpha
Helix 62
AG8
D
322 340Right-handed alpha
Helix 63
AG9
D
345 358Right-handed alpha
Helix 64
AH1
D
368 382Right-handed alpha
Helix 65
AH2
D
407 417Right-handed alpha
Helix 66
AH3
D
422 431Right-handed alpha
Helix 67
AH4
E
11 23Right-handed alpha
Helix 68
AH5
E
42 55Right-handed alpha
Helix 69
AH6
E
68 82Right-handed alpha
Helix 70
AH7
E
98 110Right-handed alpha
Helix 71
AH8
E
127 133Right-handed 310
Helix 72
AH9
E
136 143Right-handed alpha
Helix 73
AI1
E
143 149Right-handed alpha
Helix 74
AI2
E
161 166Right-handed alpha
Helix 75
AI3
E
183 192Right-handed alpha
Helix 76
AI4
E
200 216Right-handed alpha
Helix 77
AI5
E
221 232Right-handed alpha
Helix 78
AI6
E
232 237Right-handed alpha
Helix 79
AI7
E
237 242Right-handed alpha
Helix 80
AI8
E
249 267Right-handed alpha
Helix 81
AI9
E
274 283Right-handed alpha
Helix 82
AJ1
E
303 318Right-handed alpha
Helix 83
AJ2
E
320 322Right-handed 310
Helix 84
AJ3
E
323 328Right-handed alpha
Helix 85
AJ4
E
359 370Right-handed alpha
Helix 86
AJ5
E
377 390Right-handed alpha
Helix 87
AJ6
E
412 423Right-handed alpha
Helix 88
AJ7
E
426 431Right-handed alpha
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There are 6 sheets in PDB entry 7JPQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
443 447first strand
Strand 2
B
310 314parallel
Strand 3
B
418 424parallel
Strand 4
B
388 392parallel
Strand 5
B
336 339parallel
Strand 6
C
10 13anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
133 136first strand
Strand 2
C
215 219parallel
Strand 3
C
246 252parallel
Strand 4
C
101 106parallel
Strand 5
C
272 277parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
95 100first strand
Strand 2
D
154 159parallel
Strand 3
D
187 193parallel
Strand 4
D
61 66parallel
Strand 5
D
214 216parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
385 387first strand
Strand 2
D
402 404anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
58 62first strand
Strand 2
E
120 125parallel
Strand 3
E
152 158parallel
Strand 4
E
32 36parallel
Strand 5
E
175 178parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
357 358first strand
Strand 2
E
406 409anti-parallel
Strand 3
E
393 395anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il