Analysis of interatomic Contacts of Structural Units in PDB entry:
7JPR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7JPR entry

There are 5 chains in PDB entry 7JPR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 486ASP 860
B
 ASP 268GLU 574
C
 THR 3TRP 709
D
 LEU 17SER 431
E
 GLU 5ASP 433
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are103 helices in PDB entry 7JPR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
487 496Right-handed alpha
Helix 2
AA2
A
507 523Right-handed alpha
Helix 3
AA3
A
539 557Right-handed alpha
Helix 4
AA4
A
577 588Right-handed alpha
Helix 5
AA5
A
593 605Right-handed alpha
Helix 6
AA6
A
622 626Right-handed 310
Helix 7
AA7
A
631 639Right-handed alpha
Helix 8
AA8
A
658 663Right-handed alpha
Helix 9
AA9
A
682 693Right-handed alpha
Helix 10
AB1
A
701 716Right-handed alpha
Helix 11
AB2
A
718 736Right-handed alpha
Helix 12
AB3
A
747 759Right-handed alpha
Helix 13
AB4
A
762 769Right-handed alpha
Helix 14
AB5
A
771 789Right-handed alpha
Helix 15
AB6
A
794 810Right-handed alpha
Helix 16
AB7
A
815 829Right-handed alpha
Helix 17
AB8
A
850 860Right-handed alpha
Helix 18
AB9
B
269 276Right-handed alpha
Helix 19
AC1
B
284 297Right-handed alpha
Helix 20
AC2
B
297 307Right-handed alpha
Helix 21
AC3
B
319 330Right-handed alpha
Helix 22
AC4
B
347 358Right-handed alpha
Helix 23
AC5
B
368 383Right-handed alpha
Helix 24
AC6
B
397 401Right-handed 310
Helix 25
AC7
B
402 414Right-handed alpha
Helix 26
AC8
B
428 432Right-handed 310
Helix 27
AC9
B
434 441Right-handed alpha
Helix 28
AD1
B
473 483Right-handed alpha
Helix 29
AD2
B
485 503Right-handed alpha
Helix 30
AD3
B
512 523Right-handed alpha
Helix 31
AD4
B
528 542Right-handed alpha
Helix 32
AD5
B
562 572Right-handed alpha
Helix 33
AD6
C
25 31Right-handed alpha
Helix 34
AD7
C
36 86Right-handed alpha
Helix 35
AD8
C
113 129Right-handed alpha
Helix 36
AD9
C
143 159Right-handed alpha
Helix 37
AE1
C
180 192Right-handed alpha
Helix 38
AE2
C
221 225Right-handed 310
Helix 39
AE3
C
226 240Right-handed alpha
Helix 40
AE4
C
241 244Right-handed 310
Helix 41
AE5
C
257 263Right-handed alpha
Helix 42
AE6
C
264 269Right-handed alpha
Helix 43
AE7
C
282 291Right-handed alpha
Helix 44
AE8
C
303 313Right-handed alpha
Helix 45
AE9
C
321 339Right-handed alpha
Helix 46
AF1
C
340 345Right-handed 310
Helix 47
AF2
C
347 357Right-handed alpha
Helix 48
AF3
C
359 368Right-handed alpha
Helix 49
AF4
C
369 379Right-handed alpha
Helix 50
AF5
C
383 390Right-handed alpha
Helix 51
AF6
C
390 426Right-handed alpha
Helix 52
AF7
C
434 444Right-handed alpha
Helix 53
AF8
C
451 462Right-handed alpha
Helix 54
AF9
C
464 482Right-handed alpha
Helix 55
AG1
C
487 500Right-handed alpha
Helix 56
AG2
C
550 568Right-handed alpha
Helix 57
AG3
C
584 592Right-handed alpha
Helix 58
AG4
C
595 606Right-handed alpha
Helix 59
AG5
C
628 638Right-handed alpha
Helix 60
AG6
C
645 661Right-handed alpha
Helix 61
AG7
C
675 691Right-handed alpha
Helix 62
AG8
D
18 29Right-handed alpha
Helix 63
AG9
D
40 57Right-handed alpha
Helix 64
AH1
D
72 86Right-handed alpha
Helix 65
AH2
D
87 93Right-handed alpha
Helix 66
AH3
D
106 118Right-handed alpha
Helix 67
AH4
D
120 125Right-handed alpha
Helix 68
AH5
D
131 141Right-handed alpha
Helix 69
AH6
D
160 166Right-handed 310
Helix 70
AH7
D
170 182Right-handed alpha
Helix 71
AH8
D
203 210Right-handed alpha
Helix 72
AH9
D
222 234Right-handed alpha
Helix 73
AI1
D
242 258Right-handed alpha
Helix 74
AI2
D
259 273Right-handed alpha
Helix 75
AI3
D
275 288Right-handed alpha
Helix 76
AI4
D
298 310Right-handed alpha
Helix 77
AI5
D
312 320Right-handed alpha
Helix 78
AI6
D
322 339Right-handed alpha
Helix 79
AI7
D
345 359Right-handed alpha
Helix 80
AI8
D
368 382Right-handed alpha
Helix 81
AI9
D
407 417Right-handed alpha
Helix 82
AJ1
D
422 431Right-handed alpha
Helix 83
AJ2
E
12 23Right-handed alpha
Helix 84
AJ3
E
42 54Right-handed alpha
Helix 85
AJ4
E
68 85Right-handed alpha
Helix 86
AJ5
E
98 110Right-handed alpha
Helix 87
AJ6
E
126 130Right-handed 310
Helix 88
AJ7
E
136 143Right-handed alpha
Helix 89
AJ8
E
143 149Right-handed alpha
Helix 90
AJ9
E
161 165Right-handed 310
Helix 91
AK1
E
183 192Right-handed alpha
Helix 92
AK2
E
200 216Right-handed alpha
Helix 93
AK3
E
221 237Right-handed alpha
Helix 94
AK4
E
237 243Right-handed alpha
Helix 95
AK5
E
249 268Right-handed alpha
Helix 96
AK6
E
274 284Right-handed alpha
Helix 97
AK7
E
305 318Right-handed alpha
Helix 98
AK8
E
320 322Right-handed 310
Helix 99
AK9
E
323 329Right-handed alpha
Helix 100
AL1
E
358 370Right-handed alpha
Helix 101
AL2
E
377 388Right-handed alpha
Helix 102
AL3
E
412 423Right-handed alpha
Helix 103
AL4
E
427 432Right-handed alpha
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There are 8 sheets in PDB entry 7JPR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
565 569first strand
Strand 2
A
616 620parallel
Strand 3
A
648 652parallel
Strand 4
A
529 532parallel
Strand 5
A
674 675parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
832 833first strand
Strand 2
A
846 847anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
335 339first strand
Strand 2
B
388 392parallel
Strand 3
B
418 424parallel
Strand 4
B
310 314parallel
Strand 5
B
443 447parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
133 136first strand
Strand 2
C
216 219parallel
Strand 3
C
247 252parallel
Strand 4
C
100 106parallel
Strand 5
C
271 276parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
95 100first strand
Strand 2
D
154 159parallel
Strand 3
D
187 193parallel
Strand 4
D
62 66parallel
Strand 5
D
213 216parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
385 387first strand
Strand 2
D
402 404anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
58 62first strand
Strand 2
E
120 125parallel
Strand 3
E
152 158parallel
Strand 4
E
32 36parallel
Strand 5
E
175 178parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
393 395first strand
Strand 2
E
407 409anti-parallel
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