Analysis of interatomic Contacts of Structural Units in PDB entry:
7JPT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7JPT entry

There is 1 chain in PDB entry 7JPT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 30	GLU 1383

There are 27 helices in PDB entry 7JPT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	61	65	Right-handed 310
Helix 2	AA2	A	71	73	Right-handed 310
Helix 3	AA3	A	199	204	Right-handed alpha
Helix 4	AA4	A	239	250	Right-handed alpha
Helix 5	AA5	A	259	268	Right-handed alpha
Helix 6	AA6	A	382	391	Right-handed alpha
Helix 7	AA7	A	401	411	Right-handed alpha
Helix 8	AA8	A	411	417	Right-handed alpha
Helix 9	AA9	A	502	505	Right-handed 310
Helix 10	AB1	A	534	549	Right-handed alpha
Helix 11	AB2	A	670	681	Right-handed alpha
Helix 12	AB3	A	690	702	Right-handed alpha
Helix 13	AB4	A	719	723	Right-handed 310
Helix 14	AB5	A	796	800	Right-handed 310
Helix 15	AB6	A	804	813	Right-handed alpha
Helix 16	AB7	A	832	841	Right-handed alpha
Helix 17	AB8	A	852	867	Right-handed alpha
Helix 18	AB9	A	973	983	Right-handed alpha
Helix 19	AC1	A	992	1003	Right-handed alpha
Helix 20	AC2	A	1004	1006	Right-handed 310
Helix 21	AC3	A	1123	1134	Right-handed alpha
Helix 22	AC4	A	1143	1158	Right-handed alpha
Helix 23	AC5	A	1268	1281	Right-handed alpha
Helix 24	AC6	A	1292	1304	Right-handed alpha
Helix 25	AC7	A	1318	1322	Right-handed 310
Helix 26	AC8	A	1365	1368	Right-handed 310
Helix 27	AC9	A	1369	1375	Right-handed alpha

There are 28 sheets in PDB entry 7JPT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	40	first strand
Strand 2	A	140	142	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	67	70	first strand
Strand 2	A	74	77	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	85	first strand
Strand 2	A	96	98	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	125	126	first strand
Strand 2	A	129	130	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	159	162	first strand
Strand 2	A	206	209	anti-parallel
Strand 3	A	193	195	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	173	175	first strand
Strand 2	A	178	180	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	228	238	first strand
Strand 2	A	336	343	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	275	276	first strand
Strand 2	A	319	321	anti-parallel
Strand 3	A	326	328	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	299	300	first strand
Strand 2	A	432	433	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	366	368	first strand
Strand 2	A	371	380	anti-parallel
Strand 3	A	481	488	anti-parallel
Strand 4	A	421	427	parallel
Strand 5	A	435	436	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	395	396	first strand
Strand 2	A	481	488	anti-parallel
Strand 3	A	421	427	parallel
Strand 4	A	461	466	anti-parallel
Strand 5	A	471	475	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	507	508	first strand
Strand 2	A	515	517	anti-parallel
Strand 3	A	622	624	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	570	571	first strand
Strand 2	A	556	561	anti-parallel
Strand 3	A	597	600	anti-parallel
Strand 4	A	609	612	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	655	660	first strand
Strand 2	A	780	785	anti-parallel
Strand 3	A	684	685	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	711	716	first strand
Strand 2	A	752	755	anti-parallel
Strand 3	A	769	772	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	823	831	first strand
Strand 2	A	926	932	anti-parallel
Strand 3	A	845	847	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	849	850	first strand
Strand 2	A	876	877	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	872	873	first strand
Strand 2	A	907	908	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	956	958	first strand
Strand 2	A	961	964	anti-parallel
Strand 3	A	1089	1091	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	970	972	first strand
Strand 2	A	1083	1085	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1009	1010	first strand
Strand 2	A	1058	1064	anti-parallel
Strand 3	A	1015	1017	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1009	1010	first strand
Strand 2	A	1058	1064	anti-parallel
Strand 3	A	1075	1078	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1108	1110	first strand
Strand 2	A	1113	1118	anti-parallel
Strand 3	A	1218	1222	anti-parallel
Strand 4	A	1137	1138	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1161	1162	first strand
Strand 2	A	1197	1200	anti-parallel
Strand 3	A	1206	1209	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1165	1167	first strand
Strand 2	A	1174	1176	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1249	1250	first strand
Strand 2	A	1255	1256	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1258	1259	first strand
Strand 2	A	1376	1379	anti-parallel
Strand 3	A	1311	1313	parallel
Strand 4	A	1348	1352	anti-parallel
Strand 5	A	1358	1362	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1316	1317	first strand
Strand 2	A	1324	1325	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7JPT

Analysis of interatomic Contacts of Structural Units in PDB entry:
7JPT