Analysis of interatomic Contacts of Structural Units in PDB entry:
7JPV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7JPV entry

There are 3 chains in PDB entry 7JPV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 32	GLY 1434
E	MET 1	GLU 219
F	PHE 27	CYS 1074

There are 92 helices in PDB entry 7JPV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	56	65	Right-handed alpha
Helix 2	AA2	A	80	106	Right-handed alpha
Helix 3	AA3	A	122	143	Right-handed alpha
Helix 4	AA4	A	162	166	Right-handed alpha
Helix 5	AA5	A	167	171	Right-handed 310
Helix 6	AA6	A	172	179	Right-handed alpha
Helix 7	AA7	A	179	193	Right-handed alpha
Helix 8	AA8	A	196	218	Right-handed alpha
Helix 9	AA9	A	277	290	Right-handed alpha
Helix 10	AB1	A	293	302	Right-handed alpha
Helix 11	AB2	A	310	346	Right-handed alpha
Helix 12	AB3	A	434	450	Right-handed alpha
Helix 13	AB4	A	457	487	Right-handed alpha
Helix 14	AB5	A	488	491	Right-handed 310
Helix 15	AB6	A	494	498	Right-handed 310
Helix 16	AB7	A	499	515	Right-handed alpha
Helix 17	AB8	A	520	530	Right-handed alpha
Helix 18	AB9	A	531	535	Right-handed 310
Helix 19	AC1	A	536	542	Right-handed alpha
Helix 20	AC2	A	542	582	Right-handed alpha
Helix 21	AC3	A	599	612	Right-handed alpha
Helix 22	AC4	A	615	627	Right-handed alpha
Helix 23	AC5	A	631	636	Right-handed alpha
Helix 24	AC6	A	639	647	Right-handed alpha
Helix 25	AC7	A	647	657	Right-handed alpha
Helix 26	AC8	A	663	673	Right-handed alpha
Helix 27	AC9	A	798	811	Right-handed alpha
Helix 28	AD1	A	813	818	Right-handed alpha
Helix 29	AD2	A	828	852	Right-handed alpha
Helix 30	AD3	A	868	881	Right-handed alpha
Helix 31	AD4	A	893	899	Right-handed alpha
Helix 32	AD5	A	907	912	Right-handed alpha
Helix 33	AD6	A	913	928	Right-handed alpha
Helix 34	AD7	A	929	950	Right-handed alpha
Helix 35	AD8	A	977	979	Right-handed 310
Helix 36	AD9	A	999	1012	Right-handed alpha
Helix 37	AE1	A	1015	1024	Right-handed alpha
Helix 38	AE2	A	1043	1048	Right-handed alpha
Helix 39	AE3	A	1054	1072	Right-handed alpha
Helix 40	AE4	A	1084	1095	Right-handed alpha
Helix 41	AE5	A	1105	1116	Right-handed alpha
Helix 42	AE6	A	1117	1137	Right-handed alpha
Helix 43	AE7	A	1152	1171	Right-handed alpha
Helix 44	AE8	A	1180	1206	Right-handed alpha
Helix 45	AE9	A	1232	1235	Right-handed 310
Helix 46	AF1	A	1236	1241	Right-handed alpha
Helix 47	AF2	A	1242	1249	Right-handed 310
Helix 48	AF3	A	1250	1262	Right-handed alpha
Helix 49	AF4	A	1269	1289	Right-handed alpha
Helix 50	AF5	A	1308	1322	Right-handed alpha
Helix 51	AF6	A	1324	1332	Right-handed alpha
Helix 52	AF7	A	1356	1381	Right-handed alpha
Helix 53	AF8	A	1383	1388	Right-handed alpha
Helix 54	AF9	A	1395	1410	Right-handed alpha
Helix 55	AG1	A	1425	1429	Right-handed 310
Helix 56	AG2	E	6	29	Right-handed alpha
Helix 57	AG3	E	108	127	Right-handed alpha
Helix 58	AG4	E	129	135	Right-handed 310
Helix 59	AG5	E	136	163	Right-handed alpha
Helix 60	AG6	E	179	204	Right-handed alpha
Helix 61	AG7	F	29	51	Right-handed alpha
Helix 62	AG8	F	53	64	Right-handed alpha
Helix 63	AG9	F	76	110	Right-handed alpha
Helix 64	AH1	F	178	188	Right-handed alpha
Helix 65	AH2	F	191	202	Right-handed alpha
Helix 66	AH3	F	239	242	Right-handed 310
Helix 67	AH4	F	243	250	Right-handed alpha
Helix 68	AH5	F	263	267	Right-handed 310
Helix 69	AH6	F	268	283	Right-handed alpha
Helix 70	AH7	F	313	325	Right-handed alpha
Helix 71	AH8	F	334	346	Right-handed alpha
Helix 72	AH9	F	371	379	Right-handed alpha
Helix 73	AI1	F	398	408	Right-handed alpha
Helix 74	AI2	F	418	422	Right-handed 310
Helix 75	AI3	F	428	433	Right-handed alpha
Helix 76	AI4	F	433	438	Right-handed alpha
Helix 77	AI5	F	496	501	Right-handed alpha
Helix 78	AI6	F	542	546	Right-handed 310
Helix 79	AI7	F	562	566	Right-handed 310
Helix 80	AI8	F	572	582	Right-handed alpha
Helix 81	AI9	F	640	649	Right-handed alpha
Helix 82	AJ1	F	650	651	Right-handed 310
Helix 83	AJ2	F	652	654	Right-handed 310
Helix 84	AJ3	F	655	660	Right-handed alpha
Helix 85	AJ4	F	678	693	Right-handed alpha
Helix 86	AJ5	F	701	722	Right-handed alpha
Helix 87	AJ6	F	748	753	Right-handed alpha
Helix 88	AJ7	F	764	773	Right-handed alpha
Helix 89	AJ8	F	820	830	Right-handed alpha
Helix 90	AJ9	F	877	882	Right-handed alpha
Helix 91	AK1	F	882	892	Right-handed alpha
Helix 92	AK2	F	1045	1049	Right-handed 310

There are 16 sheets in PDB entry 7JPV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	225	228	first strand
Strand 2	A	259	262	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	955	956	first strand
Strand 2	A	991	992	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	971	975	first strand
Strand 2	A	983	987	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	68	72	first strand
Strand 2	F	632	636	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	144	146	first strand
Strand 2	F	124	128	parallel
Strand 3	F	167	168	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	152	153	first strand
Strand 2	F	160	161	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	217	220	first strand
Strand 2	F	208	212	anti-parallel
Strand 3	F	486	495	anti-parallel
Strand 4	F	460	469	anti-parallel
Strand 5	F	447	448	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	217	220	first strand
Strand 2	F	208	212	anti-parallel
Strand 3	F	486	495	anti-parallel
Strand 4	F	460	469	anti-parallel
Strand 5	F	452	453	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	300	302	first strand
Strand 2	F	293	296	anti-parallel
Strand 3	F	258	261	parallel
Strand 4	F	359	364	parallel
Strand 5	F	385	391	parallel
Strand 6	F	411	415	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	523	525	first strand
Strand 2	F	513	517	anti-parallel
Strand 3	F	621	626	anti-parallel
Strand 4	F	605	613	anti-parallel
Strand 5	F	586	592	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	661	663	first strand
Strand 2	F	744	746	anti-parallel
Strand 3	F	736	739	anti-parallel
Strand 4	F	813	819	anti-parallel
Strand 5	F	732	734	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	661	663	first strand
Strand 2	F	744	746	anti-parallel
Strand 3	F	736	739	anti-parallel
Strand 4	F	813	819	anti-parallel
Strand 5	F	795	800	anti-parallel
Strand 6	F	777	779	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	803	804	first strand
Strand 2	F	809	810	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	862	864	first strand
Strand 2	F	851	857	anti-parallel
Strand 3	F	1016	1022	anti-parallel
Strand 4	F	1003	1010	anti-parallel
Strand 5	F	992	998	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	895	897	first strand
Strand 2	F	984	986	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	900	907	first strand
Strand 2	F	975	981	anti-parallel
Strand 3	F	1039	1041	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7JPV

Analysis of interatomic Contacts of Structural Units in PDB entry:
7JPV