Analysis of interatomic Contacts of Structural Units in PDB entry:
7JPW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7JPW entry

There are 3 chains in PDB entry 7JPW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 37	GLY 1434
E	MET 1	GLU 219
F	PHE 27	CYS 1074

There are 96 helices in PDB entry 7JPW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	52	70	Right-handed alpha
Helix 2	AA2	A	74	78	Right-handed 310
Helix 3	AA3	A	80	88	Right-handed alpha
Helix 4	AA4	A	89	103	Right-handed alpha
Helix 5	AA5	A	122	140	Right-handed alpha
Helix 6	AA6	A	161	172	Right-handed 310
Helix 7	AA7	A	173	179	Right-handed alpha
Helix 8	AA8	A	180	187	Right-handed alpha
Helix 9	AA9	A	196	218	Right-handed alpha
Helix 10	AB1	A	277	290	Right-handed alpha
Helix 11	AB2	A	293	306	Right-handed alpha
Helix 12	AB3	A	310	321	Right-handed alpha
Helix 13	AB4	A	322	345	Right-handed alpha
Helix 14	AB5	A	434	450	Right-handed alpha
Helix 15	AB6	A	457	486	Right-handed alpha
Helix 16	AB7	A	488	492	Right-handed 310
Helix 17	AB8	A	495	498	Right-handed 310
Helix 18	AB9	A	499	512	Right-handed alpha
Helix 19	AC1	A	520	526	Right-handed alpha
Helix 20	AC2	A	526	541	Right-handed alpha
Helix 21	AC3	A	548	559	Right-handed alpha
Helix 22	AC4	A	561	581	Right-handed alpha
Helix 23	AC5	A	599	613	Right-handed alpha
Helix 24	AC6	A	615	627	Right-handed alpha
Helix 25	AC7	A	631	636	Right-handed alpha
Helix 26	AC8	A	638	647	Right-handed alpha
Helix 27	AC9	A	647	656	Right-handed alpha
Helix 28	AD1	A	664	672	Right-handed alpha
Helix 29	AD2	A	801	806	Right-handed alpha
Helix 30	AD3	A	808	818	Right-handed alpha
Helix 31	AD4	A	826	845	Right-handed alpha
Helix 32	AD5	A	847	852	Right-handed alpha
Helix 33	AD6	A	868	882	Right-handed alpha
Helix 34	AD7	A	893	899	Right-handed alpha
Helix 35	AD8	A	900	902	Right-handed 310
Helix 36	AD9	A	906	911	Right-handed alpha
Helix 37	AE1	A	914	924	Right-handed alpha
Helix 38	AE2	A	932	951	Right-handed alpha
Helix 39	AE3	A	977	979	Right-handed 310
Helix 40	AE4	A	999	1012	Right-handed alpha
Helix 41	AE5	A	1015	1025	Right-handed alpha
Helix 42	AE6	A	1038	1040	Right-handed 310
Helix 43	AE7	A	1041	1052	Right-handed alpha
Helix 44	AE8	A	1055	1069	Right-handed alpha
Helix 45	AE9	A	1083	1095	Right-handed alpha
Helix 46	AF1	A	1105	1116	Right-handed alpha
Helix 47	AF2	A	1117	1137	Right-handed alpha
Helix 48	AF3	A	1151	1173	Right-handed alpha
Helix 49	AF4	A	1180	1206	Right-handed alpha
Helix 50	AF5	A	1236	1242	Right-handed alpha
Helix 51	AF6	A	1243	1249	Right-handed 310
Helix 52	AF7	A	1250	1265	Right-handed alpha
Helix 53	AF8	A	1267	1289	Right-handed alpha
Helix 54	AF9	A	1308	1322	Right-handed alpha
Helix 55	AG1	A	1324	1331	Right-handed alpha
Helix 56	AG2	A	1356	1383	Right-handed alpha
Helix 57	AG3	A	1383	1388	Right-handed alpha
Helix 58	AG4	A	1395	1410	Right-handed alpha
Helix 59	AG5	A	1424	1428	Right-handed 310
Helix 60	AG6	E	6	26	Right-handed alpha
Helix 61	AG7	E	105	127	Right-handed alpha
Helix 62	AG8	E	136	164	Right-handed alpha
Helix 63	AG9	E	180	204	Right-handed alpha
Helix 64	AH1	F	29	53	Right-handed alpha
Helix 65	AH2	F	53	65	Right-handed alpha
Helix 66	AH3	F	76	109	Right-handed alpha
Helix 67	AH4	F	178	188	Right-handed alpha
Helix 68	AH5	F	191	202	Right-handed alpha
Helix 69	AH6	F	239	242	Right-handed 310
Helix 70	AH7	F	243	250	Right-handed alpha
Helix 71	AH8	F	263	267	Right-handed 310
Helix 72	AH9	F	268	283	Right-handed alpha
Helix 73	AI1	F	313	325	Right-handed alpha
Helix 74	AI2	F	334	346	Right-handed alpha
Helix 75	AI3	F	371	379	Right-handed alpha
Helix 76	AI4	F	398	408	Right-handed alpha
Helix 77	AI5	F	420	426	Right-handed alpha
Helix 78	AI6	F	427	431	Right-handed 310
Helix 79	AI7	F	433	439	Right-handed alpha
Helix 80	AI8	F	481	484	Right-handed 310
Helix 81	AI9	F	496	500	Right-handed alpha
Helix 82	AJ1	F	542	546	Right-handed 310
Helix 83	AJ2	F	571	582	Right-handed alpha
Helix 84	AJ3	F	640	650	Right-handed alpha
Helix 85	AJ4	F	651	654	Right-handed 310
Helix 86	AJ5	F	655	660	Right-handed alpha
Helix 87	AJ6	F	678	693	Right-handed alpha
Helix 88	AJ7	F	701	722	Right-handed alpha
Helix 89	AJ8	F	723	726	Right-handed 310
Helix 90	AJ9	F	748	754	Right-handed 310
Helix 91	AK1	F	760	763	Right-handed 310
Helix 92	AK2	F	764	773	Right-handed alpha
Helix 93	AK3	F	820	830	Right-handed alpha
Helix 94	AK4	F	877	881	Right-handed 310
Helix 95	AK5	F	882	892	Right-handed alpha
Helix 96	AK6	F	1045	1050	Right-handed alpha

There are 17 sheets in PDB entry 7JPW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	225	228	first strand
Strand 2	A	259	262	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	955	957	first strand
Strand 2	A	990	992	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	971	975	first strand
Strand 2	A	983	987	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	34	35	first strand
Strand 2	E	48	50	anti-parallel
Strand 3	E	56	59	anti-parallel
Strand 4	E	80	81	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	68	72	first strand
Strand 2	F	632	636	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	124	125	first strand
Strand 2	F	144	145	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	127	128	first strand
Strand 2	F	167	169	parallel
Strand 3	F	217	220	anti-parallel
Strand 4	F	208	212	anti-parallel
Strand 5	F	486	495	anti-parallel
Strand 6	F	460	469	anti-parallel
Strand 7	F	447	448	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	127	128	first strand
Strand 2	F	167	169	parallel
Strand 3	F	217	220	anti-parallel
Strand 4	F	208	212	anti-parallel
Strand 5	F	486	495	anti-parallel
Strand 6	F	460	469	anti-parallel
Strand 7	F	452	453	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	152	153	first strand
Strand 2	F	160	161	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	300	302	first strand
Strand 2	F	293	296	anti-parallel
Strand 3	F	255	261	parallel
Strand 4	F	358	364	parallel
Strand 5	F	384	391	parallel
Strand 6	F	411	415	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	523	525	first strand
Strand 2	F	513	517	anti-parallel
Strand 3	F	621	626	anti-parallel
Strand 4	F	602	613	anti-parallel
Strand 5	F	586	595	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	540	541	first strand
Strand 2	F	910	911	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	662	664	first strand
Strand 2	F	743	746	anti-parallel
Strand 3	F	736	739	anti-parallel
Strand 4	F	813	819	anti-parallel
Strand 5	F	732	734	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	662	664	first strand
Strand 2	F	743	746	anti-parallel
Strand 3	F	736	739	anti-parallel
Strand 4	F	813	819	anti-parallel
Strand 5	F	795	800	anti-parallel
Strand 6	F	777	779	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	803	804	first strand
Strand 2	F	809	810	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	862	864	first strand
Strand 2	F	851	857	anti-parallel
Strand 3	F	1016	1022	anti-parallel
Strand 4	F	1004	1010	anti-parallel
Strand 5	F	992	997	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	895	907	first strand
Strand 2	F	975	986	anti-parallel
Strand 3	F	1039	1041	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7JPW

Analysis of interatomic Contacts of Structural Units in PDB entry:
7JPW