Analysis of interatomic Contacts of Structural Units in PDB entry:
7JQ6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7JQ6 entry

There are 2 chains in PDB entry 7JQ6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 5HIS 371
B
 SER 5ARG 240
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 70 helices in PDB entry 7JQ6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 17Right-handed alpha
Helix 2
AA2
A
31 47Right-handed alpha
Helix 3
AA3
A
57 64Right-handed alpha
Helix 4
AA4
A
66 70Right-handed 310
Helix 5
AA5
A
71 80Right-handed alpha
Helix 6
AA6
A
126 130Right-handed alpha
Helix 7
AA7
A
163 176Right-handed alpha
Helix 8
AA8
A
195 202Right-handed alpha
Helix 9
AA9
A
206 212Right-handed alpha
Helix 10
AB1
A
236 245Right-handed alpha
Helix 11
AB2
A
245 253Right-handed alpha
Helix 12
AB3
A
254 257Right-handed 310
Helix 13
AB4
A
327 344Right-handed alpha
Helix 14
AB5
A
351 366Right-handed alpha
Helix 15
AB6
B
11 17Right-handed alpha
Helix 16
AB7
B
31 47Right-handed alpha
Helix 17
AB8
B
57 64Right-handed alpha
Helix 18
AB9
B
66 70Right-handed 310
Helix 19
AC1
B
71 80Right-handed alpha
Helix 20
AC2
B
81 83Right-handed 310
Helix 21
AC3
B
127 129Right-handed 310
Helix 22
AC4
B
133 137Right-handed 310
Helix 23
AC5
B
163 176Right-handed alpha
Helix 24
AC6
B
195 202Right-handed alpha
Helix 25
AC7
B
206 212Right-handed alpha
Helix 26
AC8
B
236 245Right-handed alpha
Helix 27
AC9
B
245 251Right-handed alpha
Helix 28
AD1
B
252 257Right-handed 310
Helix 29
AD2
B
327 344Right-handed alpha
Helix 30
AD3
B
351 366Right-handed alpha
Helix 31
AD4
C
11 17Right-handed alpha
Helix 32
AD5
C
31 47Right-handed alpha
Helix 33
AD6
C
57 64Right-handed alpha
Helix 34
AD7
C
71 80Right-handed alpha
Helix 35
AD8
C
126 130Right-handed alpha
Helix 36
AD9
C
163 176Right-handed alpha
Helix 37
AE1
C
195 202Right-handed alpha
Helix 38
AE2
C
206 212Right-handed alpha
Helix 39
AE3
C
236 245Right-handed alpha
Helix 40
AE4
C
245 253Right-handed alpha
Helix 41
AE5
C
327 344Right-handed alpha
Helix 42
AE6
C
351 366Right-handed alpha
Helix 43
AE7
D
11 17Right-handed alpha
Helix 44
AE8
D
31 47Right-handed alpha
Helix 45
AE9
D
57 64Right-handed alpha
Helix 46
AF1
D
71 80Right-handed alpha
Helix 47
AF2
D
126 130Right-handed alpha
Helix 48
AF3
D
163 176Right-handed alpha
Helix 49
AF4
D
195 202Right-handed alpha
Helix 50
AF5
D
206 212Right-handed alpha
Helix 51
AF6
D
236 245Right-handed alpha
Helix 52
AF7
D
245 251Right-handed alpha
Helix 53
AF8
D
252 257Right-handed 310
Helix 54
AF9
D
327 344Right-handed alpha
Helix 55
AG1
D
351 366Right-handed alpha
Helix 56
AG2
E
11 17Right-handed alpha
Helix 57
AG3
E
31 47Right-handed alpha
Helix 58
AG4
E
57 63Right-handed alpha
Helix 59
AG5
E
65 69Right-handed 310
Helix 60
AG6
E
71 80Right-handed alpha
Helix 61
AG7
E
127 129Right-handed 310
Helix 62
AG8
E
133 137Right-handed 310
Helix 63
AG9
E
163 176Right-handed alpha
Helix 64
AH1
E
195 202Right-handed alpha
Helix 65
AH2
E
206 212Right-handed alpha
Helix 66
AH3
E
236 245Right-handed alpha
Helix 67
AH4
E
245 253Right-handed alpha
Helix 68
AH5
E
254 257Right-handed 310
Helix 69
AH6
E
327 344Right-handed alpha
Helix 70
AH7
E
351 366Right-handed alpha
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There are 10 sheets in PDB entry 7JQ6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 86first strand
Strand 2
A
94 99anti-parallel
Strand 3
A
102 109anti-parallel
Strand 4
A
112 115anti-parallel
Strand 5
A
118 125anti-parallel
Strand 6
A
50 55parallel
Strand 7
A
140 146parallel
Strand 8
A
183 188parallel
Strand 9
A
21 25parallel
Strand 10
A
221 224parallel
Strand 11
A
214 216anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
324 325first strand
Strand 2
A
311 313parallel
Strand 3
A
273 277parallel
Strand 4
A
280 289anti-parallel
Strand 5
A
292 300anti-parallel
Strand 6
A
348 349parallel
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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
94 99first strand
Strand 2
B
102 109anti-parallel
Strand 3
B
112 115anti-parallel
Strand 4
B
118 125anti-parallel
Strand 5
B
50 55parallel
Strand 6
B
140 146parallel
Strand 7
B
183 188parallel
Strand 8
B
21 25parallel
Strand 9
B
220 224parallel
Strand 10
B
214 216anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
324 325first strand
Strand 2
B
311 313parallel
Strand 3
B
273 277parallel
Strand 4
B
280 288anti-parallel
Strand 5
B
293 300anti-parallel
Strand 6
B
348 349parallel
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There are 11 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
83 86first strand
Strand 2
C
94 99anti-parallel
Strand 3
C
102 109anti-parallel
Strand 4
C
112 115anti-parallel
Strand 5
C
118 125anti-parallel
Strand 6
C
51 55parallel
Strand 7
C
142 146parallel
Strand 8
C
183 188parallel
Strand 9
C
21 25parallel
Strand 10
C
221 224parallel
Strand 11
C
214 216anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
324 325first strand
Strand 2
C
311 313parallel
Strand 3
C
273 276parallel
Strand 4
C
281 288anti-parallel
Strand 5
C
293 300anti-parallel
Strand 6
C
348 349parallel
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There are 11 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
83 86first strand
Strand 2
D
94 99anti-parallel
Strand 3
D
102 109anti-parallel
Strand 4
D
112 115anti-parallel
Strand 5
D
118 125anti-parallel
Strand 6
D
50 55parallel
Strand 7
D
140 146parallel
Strand 8
D
183 188parallel
Strand 9
D
21 25parallel
Strand 10
D
220 224parallel
Strand 11
D
214 216anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
324 325first strand
Strand 2
D
310 313parallel
Strand 3
D
273 277parallel
Strand 4
D
280 288anti-parallel
Strand 5
D
293 300anti-parallel
Strand 6
D
348 349parallel
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There are 11 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
83 86first strand
Strand 2
E
94 99anti-parallel
Strand 3
E
102 109anti-parallel
Strand 4
E
112 115anti-parallel
Strand 5
E
118 125anti-parallel
Strand 6
E
51 55parallel
Strand 7
E
142 146parallel
Strand 8
E
183 188parallel
Strand 9
E
21 25parallel
Strand 10
E
220 224parallel
Strand 11
E
214 216anti-parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
324 325first strand
Strand 2
E
311 313parallel
Strand 3
E
273 277parallel
Strand 4
E
280 288anti-parallel
Strand 5
E
293 300anti-parallel
Strand 6
E
348 349parallel
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