Analysis of interatomic Contacts of Structural Units in PDB entry:
7JQQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7JQQ entry

There are 12 chains in PDB entry 7JQQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 4	ARG 330
B	SER 4	ARG 330
C	SER 4	ARG 330
D	SER 4	ARG 330
E	SER 4	ARG 330
K	G 1	C 117
L	G 1	C 117
M	G 1	C 117
N	G 1	C 117
O	G 1	C 117
F	G 1	A 60
G	T 1	C 60

There are 70 helices in PDB entry 7JQQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	16	Right-handed alpha
Helix 2	AA2	A	31	44	Right-handed alpha
Helix 3	AA3	A	56	60	Right-handed 310
Helix 4	AA4	A	66	70	Right-handed 310
Helix 5	AA5	A	100	105	Right-handed alpha
Helix 6	AA6	A	132	143	Right-handed alpha
Helix 7	AA7	A	164	170	Right-handed alpha
Helix 8	AA8	A	192	205	Right-handed alpha
Helix 9	AA9	A	207	216	Right-handed alpha
Helix 10	AB1	A	216	224	Right-handed alpha
Helix 11	AB2	A	293	299	Right-handed alpha
Helix 12	AB3	A	299	308	Right-handed alpha
Helix 13	AB4	A	315	329	Right-handed alpha
Helix 14	AB5	B	9	14	Right-handed alpha
Helix 15	AB6	B	29	45	Right-handed alpha
Helix 16	AB7	B	60	65	Right-handed alpha
Helix 17	AB8	B	101	107	Right-handed alpha
Helix 18	AB9	B	132	144	Right-handed alpha
Helix 19	AC1	B	164	170	Right-handed alpha
Helix 20	AC2	B	193	207	Right-handed alpha
Helix 21	AC3	B	207	215	Right-handed alpha
Helix 22	AC4	B	216	224	Right-handed alpha
Helix 23	AC5	B	227	231	Right-handed 310
Helix 24	AC6	B	279	283	Right-handed 310
Helix 25	AC7	B	291	299	Right-handed alpha
Helix 26	AC8	B	299	308	Right-handed alpha
Helix 27	AC9	B	315	330	Right-handed alpha
Helix 28	AD1	C	9	16	Right-handed alpha
Helix 29	AD2	C	29	46	Right-handed alpha
Helix 30	AD3	C	55	61	Right-handed alpha
Helix 31	AD4	C	61	68	Right-handed alpha
Helix 32	AD5	C	102	107	Right-handed 310
Helix 33	AD6	C	132	144	Right-handed alpha
Helix 34	AD7	C	145	147	Right-handed 310
Helix 35	AD8	C	164	171	Right-handed alpha
Helix 36	AD9	C	193	207	Right-handed alpha
Helix 37	AE1	C	207	216	Right-handed alpha
Helix 38	AE2	C	216	222	Right-handed alpha
Helix 39	AE3	C	294	298	Right-handed 310
Helix 40	AE4	C	299	308	Right-handed alpha
Helix 41	AE5	C	315	330	Right-handed alpha
Helix 42	AE6	D	8	16	Right-handed alpha
Helix 43	AE7	D	28	45	Right-handed alpha
Helix 44	AE8	D	56	61	Right-handed 310
Helix 45	AE9	D	99	104	Right-handed alpha
Helix 46	AF1	D	132	145	Right-handed alpha
Helix 47	AF2	D	164	170	Right-handed alpha
Helix 48	AF3	D	196	207	Right-handed alpha
Helix 49	AF4	D	207	215	Right-handed alpha
Helix 50	AF5	D	218	224	Right-handed alpha
Helix 51	AF6	D	257	260	Right-handed 310
Helix 52	AF7	D	291	299	Right-handed alpha
Helix 53	AF8	D	299	308	Right-handed alpha
Helix 54	AF9	D	317	330	Right-handed alpha
Helix 55	AG1	E	9	15	Right-handed alpha
Helix 56	AG2	E	29	46	Right-handed alpha
Helix 57	AG3	E	55	62	Right-handed 310
Helix 58	AG4	E	64	69	Right-handed alpha
Helix 59	AG5	E	70	73	Right-handed 310
Helix 60	AG6	E	101	106	Right-handed alpha
Helix 61	AG7	E	132	145	Right-handed alpha
Helix 62	AG8	E	164	171	Right-handed alpha
Helix 63	AG9	E	192	207	Right-handed alpha
Helix 64	AH1	E	207	216	Right-handed alpha
Helix 65	AH2	E	216	222	Right-handed alpha
Helix 66	AH3	E	257	260	Right-handed 310
Helix 67	AH4	E	279	283	Right-handed 310
Helix 68	AH5	E	293	299	Right-handed alpha
Helix 69	AH6	E	299	308	Right-handed alpha
Helix 70	AH7	E	316	330	Right-handed alpha

There are 18 sheets in PDB entry 7JQQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	22	23	first strand
Strand 2	A	156	157	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	53	first strand
Strand 2	A	93	97	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	78	80	first strand
Strand 2	A	85	87	anti-parallel
Strand 3	A	90	91	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	181	182	first strand
Strand 2	A	187	188	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	288	289	first strand
Strand 2	A	275	277	parallel
Strand 3	A	239	245	parallel
Strand 4	A	252	256	anti-parallel
Strand 5	A	261	263	anti-parallel
Strand 6	A	311	312	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	114	117	first strand
Strand 2	B	152	156	parallel
Strand 3	B	19	22	parallel
Strand 4	B	187	189	parallel
Strand 5	B	180	182	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	52	first strand
Strand 2	B	91	96	parallel
Strand 3	B	84	87	anti-parallel
Strand 4	B	78	81	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	288	289	first strand
Strand 2	B	276	277	parallel
Strand 3	B	239	245	parallel
Strand 4	B	252	255	anti-parallel
Strand 5	B	262	265	anti-parallel
Strand 6	B	311	313	parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	78	81	first strand
Strand 2	C	84	87	anti-parallel
Strand 3	C	90	97	anti-parallel
Strand 4	C	49	53	parallel
Strand 5	C	114	117	parallel
Strand 6	C	152	156	parallel
Strand 7	C	19	22	parallel
Strand 8	C	186	189	parallel
Strand 9	C	180	182	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	240	246	first strand
Strand 2	C	249	254	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	276	277	first strand
Strand 2	C	288	289	parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	94	97	first strand
Strand 2	D	49	53	parallel
Strand 3	D	114	118	parallel
Strand 4	D	152	157	parallel
Strand 5	D	19	23	parallel
Strand 6	D	186	189	parallel
Strand 7	D	180	182	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	78	81	first strand
Strand 2	D	84	87	anti-parallel
Strand 3	D	90	91	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	240	246	first strand
Strand 2	D	249	256	anti-parallel
Strand 3	D	261	263	anti-parallel

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There are 9 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	78	81	first strand
Strand 2	E	84	87	anti-parallel
Strand 3	E	90	96	anti-parallel
Strand 4	E	48	52	parallel
Strand 5	E	112	117	parallel
Strand 6	E	152	155	parallel
Strand 7	E	19	22	parallel
Strand 8	E	187	189	parallel
Strand 9	E	180	182	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	243	246	first strand
Strand 2	E	249	252	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	254	255	first strand
Strand 2	E	262	264	anti-parallel
Strand 3	E	311	313	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	276	277	first strand
Strand 2	E	288	289	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7JQQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
7JQQ