Analysis of interatomic Contacts of Structural Units in PDB entry:
7JR5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7JR5 entry

There are 2 chains in PDB entry 7JR5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 9VAL 490
B
 ASP 9VAL 490
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 7JR5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
68 80Right-handed alpha
Helix 2
AA2
A
115 128Right-handed alpha
Helix 3
AA3
A
138 154Right-handed alpha
Helix 4
AA4
A
283 316Right-handed alpha
Helix 5
AA5
A
316 328Right-handed alpha
Helix 6
AA6
A
332 345Right-handed alpha
Helix 7
AA7
A
369 381Right-handed alpha
Helix 8
AA8
A
398 402Right-handed 310
Helix 9
AA9
A
475 480Right-handed alpha
Helix 10
AB1
A
482 490Right-handed alpha
Helix 11
AB2
B
11 16Right-handed alpha
Helix 12
AB3
B
55 59Right-handed 310
Helix 13
AB4
B
68 74Right-handed alpha
Helix 14
AB5
B
74 82Right-handed alpha
Helix 15
AB6
B
115 128Right-handed alpha
Helix 16
AB7
B
138 153Right-handed alpha
Helix 17
AB8
B
194 204Right-handed alpha
Helix 18
AB9
B
283 288Right-handed alpha
Helix 19
AC1
B
290 313Right-handed alpha
Helix 20
AC2
B
316 328Right-handed alpha
Helix 21
AC3
B
332 339Right-handed alpha
Helix 22
AC4
B
344 349Right-handed 310
Helix 23
AC5
B
369 382Right-handed alpha
Helix 24
AC6
B
393 397Right-handed 310
Helix 25
AC7
B
398 402Right-handed 310
Helix 26
AC8
B
477 490Right-handed alpha
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There are 6 sheets in PDB entry 7JR5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 32first strand
Strand 2
A
105 106anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 164first strand
Strand 2
A
168 171anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
436 438first strand
Strand 2
A
462 464anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
162 164first strand
Strand 2
B
168 170anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
209 210first strand
Strand 2
B
256 257anti-parallel
Strand 3
B
275 276anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
436 437first strand
Strand 2
B
463 464anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il