Analysis of interatomic Contacts of Structural Units in PDB entry:
7JR7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7JR7 entry

There are 6 chains in PDB entry 7JR7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 34	LEU 648
B	PHE 28	SER 670
C	ASP 1	ASP 220
D	GLN 1	ALA 213
E	GLN 1	ASP 223
F	ASP 1	ALA 212

There are 64 helices in PDB entry 7JR7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	91	101	Right-handed alpha
Helix 2	AA2	A	121	127	Right-handed 310
Helix 3	AA3	A	143	156	Right-handed alpha
Helix 4	AA4	A	161	175	Right-handed alpha
Helix 5	AA5	A	188	192	Right-handed 310
Helix 6	AA6	A	194	208	Right-handed alpha
Helix 7	AA7	A	224	241	Right-handed alpha
Helix 8	AA8	A	253	259	Right-handed 310
Helix 9	AA9	A	276	287	Right-handed alpha
Helix 10	AB1	A	296	305	Right-handed alpha
Helix 11	AB2	A	311	331	Right-handed alpha
Helix 12	AB3	A	332	347	Right-handed alpha
Helix 13	AB4	A	363	381	Right-handed alpha
Helix 14	AB5	A	382	404	Right-handed alpha
Helix 15	AB6	A	416	455	Right-handed alpha
Helix 16	AB7	A	459	471	Right-handed alpha
Helix 17	AB8	A	471	491	Right-handed alpha
Helix 18	AB9	A	495	522	Right-handed alpha
Helix 19	AC1	A	526	546	Right-handed alpha
Helix 20	AC2	A	551	555	Right-handed 310
Helix 21	AC3	A	556	564	Right-handed alpha
Helix 22	AC4	A	566	581	Right-handed alpha
Helix 23	AC5	A	604	612	Right-handed alpha
Helix 24	AC6	A	615	618	Right-handed 310
Helix 25	AC7	A	619	628	Right-handed alpha
Helix 26	AC8	A	629	646	Right-handed alpha
Helix 27	AC9	B	113	120	Right-handed alpha
Helix 28	AD1	B	140	147	Right-handed alpha
Helix 29	AD2	B	162	175	Right-handed alpha
Helix 30	AD3	B	180	195	Right-handed alpha
Helix 31	AD4	B	214	228	Right-handed alpha
Helix 32	AD5	B	244	261	Right-handed alpha
Helix 33	AD6	B	273	278	Right-handed alpha
Helix 34	AD7	B	299	306	Right-handed alpha
Helix 35	AD8	B	316	326	Right-handed alpha
Helix 36	AD9	B	331	353	Right-handed alpha
Helix 37	AE1	B	356	360	Right-handed 310
Helix 38	AE2	B	394	411	Right-handed alpha
Helix 39	AE3	B	413	435	Right-handed alpha
Helix 40	AE4	B	444	458	Right-handed alpha
Helix 41	AE5	B	459	474	Right-handed alpha
Helix 42	AE6	B	474	485	Right-handed alpha
Helix 43	AE7	B	488	499	Right-handed alpha
Helix 44	AE8	B	500	519	Right-handed alpha
Helix 45	AE9	B	524	551	Right-handed alpha
Helix 46	AF1	B	555	573	Right-handed alpha
Helix 47	AF2	B	584	593	Right-handed alpha
Helix 48	AF3	B	594	608	Right-handed alpha
Helix 49	AF4	B	625	633	Right-handed alpha
Helix 50	AF5	B	639	665	Right-handed alpha
Helix 51	AF6	C	87	91	Right-handed 310
Helix 52	AF7	C	162	164	Right-handed 310
Helix 53	AF8	D	30	32	Right-handed 310
Helix 54	AF9	D	80	84	Right-handed 310
Helix 55	AG1	D	122	127	Right-handed alpha
Helix 56	AG2	D	184	188	Right-handed alpha
Helix 57	AG3	E	28	32	Right-handed 310
Helix 58	AG4	E	62	65	Right-handed 310
Helix 59	AG5	E	87	91	Right-handed 310
Helix 60	AG6	E	165	167	Right-handed 310
Helix 61	AG7	E	209	212	Right-handed 310
Helix 62	AG8	F	79	83	Right-handed 310
Helix 63	AG9	F	121	126	Right-handed alpha
Helix 64	AH1	F	183	188	Right-handed alpha

There are 25 sheets in PDB entry 7JR7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	74	77	first strand
Strand 2	A	37	42	anti-parallel
Strand 3	A	112	115	anti-parallel
Strand 4	A	118	119	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	67	69	first strand
Strand 2	A	45	46	anti-parallel
Strand 3	A	108	109	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	129	132	first strand
Strand 2	A	213	216	parallel
Strand 3	A	244	248	parallel
Strand 4	A	81	85	parallel
Strand 5	A	262	267	parallel
Strand 6	A	270	275	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	88	96	first strand
Strand 2	B	46	55	anti-parallel
Strand 3	B	126	134	anti-parallel
Strand 4	B	137	138	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	148	151	first strand
Strand 2	B	233	237	parallel
Strand 3	B	264	268	parallel
Strand 4	B	100	105	parallel
Strand 5	B	282	286	parallel
Strand 6	B	291	296	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	7	first strand
Strand 2	C	19	25	anti-parallel
Strand 3	C	78	83	anti-parallel
Strand 4	C	68	72	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	12	first strand
Strand 2	C	113	117	parallel
Strand 3	C	92	100	anti-parallel
Strand 4	C	36	40	anti-parallel
Strand 5	C	46	52	anti-parallel
Strand 6	C	58	60	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	12	first strand
Strand 2	C	113	117	parallel
Strand 3	C	92	100	anti-parallel
Strand 4	C	105	109	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	126	130	first strand
Strand 2	C	144	151	anti-parallel
Strand 3	C	180	187	anti-parallel
Strand 4	C	169	177	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	157	160	first strand
Strand 2	C	200	205	anti-parallel
Strand 3	C	210	215	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	7	first strand
Strand 2	D	19	29	anti-parallel
Strand 3	D	63	76	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	13	first strand
Strand 2	D	103	107	parallel
Strand 3	D	86	91	anti-parallel
Strand 4	D	34	39	anti-parallel
Strand 5	D	46	50	anti-parallel
Strand 6	D	54	55	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	13	first strand
Strand 2	D	103	107	parallel
Strand 3	D	86	91	anti-parallel
Strand 4	D	98	99	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	115	119	first strand
Strand 2	D	130	140	anti-parallel
Strand 3	D	174	183	anti-parallel
Strand 4	D	160	164	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	154	155	first strand
Strand 2	D	145	151	anti-parallel
Strand 3	D	193	199	anti-parallel
Strand 4	D	206	210	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	6	first strand
Strand 2	E	18	25	anti-parallel
Strand 3	E	78	83	anti-parallel
Strand 4	E	68	73	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	116	120	parallel
Strand 3	E	92	99	anti-parallel
Strand 4	E	34	39	anti-parallel
Strand 5	E	45	52	anti-parallel
Strand 6	E	57	60	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	116	120	parallel
Strand 3	E	92	99	anti-parallel
Strand 4	E	109	112	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	129	133	first strand
Strand 2	E	145	154	anti-parallel
Strand 3	E	183	192	anti-parallel
Strand 4	E	172	180	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	160	163	first strand
Strand 2	E	202	208	anti-parallel
Strand 3	E	213	219	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	5	first strand
Strand 2	F	18	25	anti-parallel
Strand 3	F	70	76	anti-parallel
Strand 4	F	62	67	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	13	first strand
Strand 2	F	102	106	parallel
Strand 3	F	85	90	anti-parallel
Strand 4	F	33	38	anti-parallel
Strand 5	F	45	48	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	13	first strand
Strand 2	F	102	106	parallel
Strand 3	F	85	90	anti-parallel
Strand 4	F	97	98	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	114	118	first strand
Strand 2	F	129	139	anti-parallel
Strand 3	F	173	182	anti-parallel
Strand 4	F	159	163	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	153	154	first strand
Strand 2	F	145	150	anti-parallel
Strand 3	F	191	197	anti-parallel
Strand 4	F	205	210	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7JR7

Analysis of interatomic Contacts of Structural Units in PDB entry:
7JR7