Analysis of interatomic Contacts of Structural Units in PDB entry:
7JR9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7JR9 entry

There are 7 chains in PDB entry 7JR9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 2	LEU 269
B	VAL 2	LEU 269
C	ALA 73	PRO 428
D	ALA 72	PRO 430
F	UNK 500	UNK 507
G	UNK -5	UNK 0
E	LEU 25	PHE 213

There are 30 helices in PDB entry 7JR9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	7	16	Right-handed alpha
Helix 2	AA2	A	17	19	Right-handed 310
Helix 3	AA3	A	23	41	Right-handed alpha
Helix 4	AA4	A	98	106	Right-handed alpha
Helix 5	AA5	A	149	164	Right-handed alpha
Helix 6	AA6	A	194	196	Right-handed 310
Helix 7	AA7	A	210	214	Right-handed 310
Helix 8	AA8	A	264	269	Right-handed alpha
Helix 9	AA9	B	7	15	Right-handed alpha
Helix 10	AB1	B	23	42	Right-handed alpha
Helix 11	AB2	B	98	107	Right-handed alpha
Helix 12	AB3	B	149	164	Right-handed alpha
Helix 13	AB4	B	194	196	Right-handed 310
Helix 14	AB5	B	210	214	Right-handed 310
Helix 15	AB6	B	264	269	Right-handed alpha
Helix 16	AB7	C	76	85	Right-handed alpha
Helix 17	AB8	C	113	125	Right-handed alpha
Helix 18	AB9	C	130	145	Right-handed alpha
Helix 19	AC1	C	211	215	Right-handed 310
Helix 20	AC2	C	235	245	Right-handed alpha
Helix 21	AC3	C	266	283	Right-handed alpha
Helix 22	AC4	C	310	315	Right-handed 310
Helix 23	AC5	D	73	81	Right-handed alpha
Helix 24	AC6	D	109	121	Right-handed alpha
Helix 25	AC7	D	125	142	Right-handed alpha
Helix 26	AC8	D	191	195	Right-handed 310
Helix 27	AC9	D	215	224	Right-handed alpha
Helix 28	AD1	D	246	263	Right-handed alpha
Helix 29	AD2	D	289	295	Right-handed 310
Helix 30	AD3	D	345	349	Right-handed 310

There are 18 sheets in PDB entry 7JR9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	75	85	first strand
Strand 2	A	60	72	anti-parallel
Strand 3	A	45	52	anti-parallel
Strand 4	A	250	256	parallel
Strand 5	A	240	245	anti-parallel
Strand 6	A	229	234	anti-parallel
Strand 7	A	219	224	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	119	123	first strand
Strand 2	A	144	148	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	166	168	first strand
Strand 2	A	198	200	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	172	174	first strand
Strand 2	A	180	182	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	92	93	first strand
Strand 2	B	75	85	anti-parallel
Strand 3	B	60	72	anti-parallel
Strand 4	B	45	52	anti-parallel
Strand 5	B	250	257	parallel
Strand 6	B	240	245	anti-parallel
Strand 7	B	229	234	anti-parallel
Strand 8	B	219	224	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	119	123	first strand
Strand 2	B	144	148	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	166	168	first strand
Strand 2	B	198	200	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	172	174	first strand
Strand 2	B	180	182	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	229	230	first strand
Strand 2	C	217	221	anti-parallel
Strand 3	C	167	172	anti-parallel
Strand 4	C	154	160	anti-parallel
Strand 5	C	411	418	parallel
Strand 6	C	403	408	anti-parallel
Strand 7	C	392	397	anti-parallel
Strand 8	C	377	381	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	284	286	first strand
Strand 2	C	319	321	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	290	292	first strand
Strand 2	C	299	301	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	209	210	first strand
Strand 2	D	197	201	anti-parallel
Strand 3	D	163	170	anti-parallel
Strand 4	D	147	156	anti-parallel
Strand 5	D	400	406	parallel
Strand 6	D	391	395	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	264	266	first strand
Strand 2	D	299	301	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	270	272	first strand
Strand 2	D	279	281	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	365	369	first strand
Strand 2	D	381	385	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	-3	-1	first strand
Strand 2	E	27	29	anti-parallel

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There are 14 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	50	53	first strand
Strand 2	E	56	64	anti-parallel
Strand 3	E	71	77	anti-parallel
Strand 4	E	80	88	anti-parallel
Strand 5	E	94	99	anti-parallel
Strand 6	E	104	111	anti-parallel
Strand 7	E	117	123	anti-parallel
Strand 8	E	126	134	anti-parallel
Strand 9	E	141	147	anti-parallel
Strand 10	E	150	157	anti-parallel
Strand 11	E	163	168	anti-parallel
Strand 12	E	177	184	anti-parallel
Strand 13	E	189	195	anti-parallel
Strand 14	E	201	203	anti-parallel

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There are 14 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	50	53	first strand
Strand 2	E	56	64	anti-parallel
Strand 3	E	71	77	anti-parallel
Strand 4	E	80	88	anti-parallel
Strand 5	E	94	99	anti-parallel
Strand 6	E	104	111	anti-parallel
Strand 7	E	117	123	anti-parallel
Strand 8	E	126	134	anti-parallel
Strand 9	E	141	147	anti-parallel
Strand 10	E	150	157	anti-parallel
Strand 11	E	163	168	anti-parallel
Strand 12	E	177	184	anti-parallel
Strand 13	E	189	195	anti-parallel
Strand 14	E	208	209	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7JR9

Analysis of interatomic Contacts of Structural Units in PDB entry:
7JR9