Analysis of interatomic Contacts of Structural Units in PDB entry:
7JRA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7JRA entry

There are 3 chains in PDB entry 7JRA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 81LEU 233
B
 ARG 82LEU 233
C
 SER 85LEU 233
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 3 helices in PDB entry 7JRA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
214 218Right-handed 310
Helix 2
AA2
B
214 218Right-handed 310
Helix 3
AA3
C
214 218Right-handed 310
Back to top of page

There are 9 sheets in PDB entry 7JRA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 105first strand
Strand 2
A
89 94anti-parallel
Strand 3
A
112 114anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 105first strand
Strand 2
A
89 94anti-parallel
Strand 3
A
227 232anti-parallel
Strand 4
A
130 143anti-parallel
Strand 5
A
189 202anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 120first strand
Strand 2
A
123 125anti-parallel
Strand 3
A
207 212anti-parallel
Strand 4
A
152 160anti-parallel
Strand 5
A
163 174anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
104 105first strand
Strand 2
B
89 94anti-parallel
Strand 3
B
112 114anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
104 105first strand
Strand 2
B
89 94anti-parallel
Strand 3
B
227 232anti-parallel
Strand 4
B
130 143anti-parallel
Strand 5
B
189 202anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
118 120first strand
Strand 2
B
123 125anti-parallel
Strand 3
B
207 212anti-parallel
Strand 4
B
152 160anti-parallel
Strand 5
B
165 174anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
104 105first strand
Strand 2
C
89 94anti-parallel
Strand 3
C
112 114anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
104 105first strand
Strand 2
C
89 94anti-parallel
Strand 3
C
227 232anti-parallel
Strand 4
C
130 143anti-parallel
Strand 5
C
189 202anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
118 120first strand
Strand 2
C
123 125anti-parallel
Strand 3
C
207 212anti-parallel
Strand 4
C
152 159anti-parallel
Strand 5
C
166 174anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il