Analysis of interatomic Contacts of Structural Units in PDB entry:
7JRD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7JRD entry

There are 2 chains in PDB entry 7JRD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 34	MET 713
B	ARG 5	LYS 692

There are 36 helices in PDB entry 7JRD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	81	85	Right-handed 310
Helix 2	AA2	A	91	107	Right-handed alpha
Helix 3	AA3	A	117	122	Right-handed 310
Helix 4	AA4	A	218	222	Right-handed 310
Helix 5	AA5	A	288	294	Right-handed alpha
Helix 6	AA6	A	540	544	Right-handed 310
Helix 7	AA7	B	13	30	Right-handed alpha
Helix 8	AA8	B	42	52	Right-handed alpha
Helix 9	AA9	B	61	70	Right-handed alpha
Helix 10	AB1	B	126	134	Right-handed alpha
Helix 11	AB2	B	135	137	Right-handed 310
Helix 12	AB3	B	145	154	Right-handed alpha
Helix 13	AB4	B	167	171	Right-handed 310
Helix 14	AB5	B	192	202	Right-handed alpha
Helix 15	AB6	B	213	219	Right-handed alpha
Helix 16	AB7	B	224	226	Right-handed 310
Helix 17	AB8	B	264	280	Right-handed alpha
Helix 18	AB9	B	316	332	Right-handed alpha
Helix 19	AC1	B	335	345	Right-handed alpha
Helix 20	AC2	B	352	366	Right-handed alpha
Helix 21	AC3	B	377	387	Right-handed alpha
Helix 22	AC4	B	396	406	Right-handed alpha
Helix 23	AC5	B	427	431	Right-handed 310
Helix 24	AC6	B	450	454	Right-handed 310
Helix 25	AC7	B	470	482	Right-handed alpha
Helix 26	AC8	B	485	489	Right-handed 310
Helix 27	AC9	B	502	506	Right-handed 310
Helix 28	AD1	B	527	538	Right-handed alpha
Helix 29	AD2	B	548	554	Right-handed alpha
Helix 30	AD3	B	568	570	Right-handed 310
Helix 31	AD4	B	585	587	Right-handed 310
Helix 32	AD5	B	603	605	Right-handed 310
Helix 33	AD6	B	606	622	Right-handed alpha
Helix 34	AD7	B	659	665	Right-handed alpha
Helix 35	AD8	B	665	677	Right-handed alpha
Helix 36	AD9	B	681	691	Right-handed alpha

There are 18 sheets in PDB entry 7JRD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	86	87	first strand
Strand 2	A	48	52	anti-parallel
Strand 3	A	159	166	anti-parallel
Strand 4	A	127	134	anti-parallel
Strand 5	A	112	114	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	77	78	first strand
Strand 2	A	191	192	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	142	145	first strand
Strand 2	A	151	155	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	172	173	first strand
Strand 2	A	362	363	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	178	189	first strand
Strand 2	A	232	238	anti-parallel
Strand 3	A	243	251	anti-parallel
Strand 4	A	266	277	anti-parallel
Strand 5	A	280	287	anti-parallel
Strand 6	A	307	316	anti-parallel
Strand 7	A	322	328	anti-parallel
Strand 8	A	334	342	anti-parallel
Strand 9	A	178	189	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	385	387	first strand
Strand 2	A	365	370	anti-parallel
Strand 3	A	530	537	anti-parallel
Strand 4	A	433	441	anti-parallel
Strand 5	A	420	425	anti-parallel
Strand 6	A	411	414	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	396	399	first strand
Strand 2	A	402	405	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	567	568	first strand
Strand 2	A	549	559	anti-parallel
Strand 3	A	578	582	anti-parallel
Strand 4	A	589	592	anti-parallel
Strand 5	A	602	605	anti-parallel
Strand 6	A	613	620	anti-parallel
Strand 7	A	609	610	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	567	568	first strand
Strand 2	A	549	559	anti-parallel
Strand 3	A	704	711	anti-parallel
Strand 4	A	656	662	anti-parallel
Strand 5	A	643	650	anti-parallel
Strand 6	A	613	620	anti-parallel
Strand 7	A	609	610	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	7	11	first strand
Strand 2	B	35	39	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	60	first strand
Strand 2	B	255	259	anti-parallel
Strand 3	B	75	84	anti-parallel
Strand 4	B	89	90	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	60	first strand
Strand 2	B	255	259	anti-parallel
Strand 3	B	75	84	anti-parallel
Strand 4	B	307	310	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	156	158	first strand
Strand 2	B	114	117	parallel
Strand 3	B	207	211	parallel
Strand 4	B	92	100	anti-parallel
Strand 5	B	228	231	anti-parallel
Strand 6	B	237	239	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	156	158	first strand
Strand 2	B	114	117	parallel
Strand 3	B	207	211	parallel
Strand 4	B	92	100	anti-parallel
Strand 5	B	249	252	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	346	351	first strand
Strand 2	B	370	375	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	393	395	first strand
Strand 2	B	599	602	anti-parallel
Strand 3	B	409	415	anti-parallel
Strand 4	B	650	652	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	492	494	first strand
Strand 2	B	458	461	parallel
Strand 3	B	543	547	parallel
Strand 4	B	436	443	anti-parallel
Strand 5	B	572	575	anti-parallel
Strand 6	B	581	583	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	492	494	first strand
Strand 2	B	458	461	parallel
Strand 3	B	543	547	parallel
Strand 4	B	436	443	anti-parallel
Strand 5	B	593	595	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7JRD

Analysis of interatomic Contacts of Structural Units in PDB entry:
7JRD