Analysis of interatomic Contacts of Structural Units in PDB entry:
7JRI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7JRI entry

There are 2 chains in PDB entry 7JRI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 9	VAL 490
B	ASP 9	VAL 490

There are 31 helices in PDB entry 7JRI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	15	Right-handed 310
Helix 2	AA2	A	46	50	Right-handed 310
Helix 3	AA3	A	54	58	Right-handed 310
Helix 4	AA4	A	68	74	Right-handed alpha
Helix 5	AA5	A	76	81	Right-handed alpha
Helix 6	AA6	A	116	128	Right-handed alpha
Helix 7	AA7	A	138	154	Right-handed alpha
Helix 8	AA8	A	195	204	Right-handed alpha
Helix 9	AA9	A	246	251	Right-handed alpha
Helix 10	AB1	A	287	329	Right-handed alpha
Helix 11	AB2	A	332	345	Right-handed alpha
Helix 12	AB3	A	369	381	Right-handed alpha
Helix 13	AB4	A	475	480	Right-handed alpha
Helix 14	AB5	B	11	16	Right-handed alpha
Helix 15	AB6	B	55	59	Right-handed 310
Helix 16	AB7	B	62	66	Right-handed 310
Helix 17	AB8	B	68	74	Right-handed alpha
Helix 18	AB9	B	74	82	Right-handed alpha
Helix 19	AC1	B	116	128	Right-handed alpha
Helix 20	AC2	B	137	154	Right-handed alpha
Helix 21	AC3	B	195	200	Right-handed alpha
Helix 22	AC4	B	242	247	Right-handed alpha
Helix 23	AC5	B	283	298	Right-handed alpha
Helix 24	AC6	B	298	313	Right-handed alpha
Helix 25	AC7	B	313	326	Right-handed alpha
Helix 26	AC8	B	327	329	Right-handed 310
Helix 27	AC9	B	332	340	Right-handed alpha
Helix 28	AD1	B	341	347	Right-handed alpha
Helix 29	AD2	B	369	382	Right-handed alpha
Helix 30	AD3	B	398	402	Right-handed 310
Helix 31	AD4	B	477	488	Right-handed alpha

There are 11 sheets in PDB entry 7JRI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	33	first strand
Strand 2	A	104	106	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	170	first strand
Strand 2	A	187	188	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	258	259	first strand
Strand 2	A	273	274	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	262	264	first strand
Strand 2	A	267	270	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	390	391	first strand
Strand 2	A	411	412	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	433	438	first strand
Strand 2	A	462	467	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	161	163	first strand
Strand 2	B	169	171	anti-parallel
Strand 3	B	185	188	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	206	209	first strand
Strand 2	B	257	260	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	352	355	first strand
Strand 2	B	424	427	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	388	389	first strand
Strand 2	B	413	414	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	446	447	first strand
Strand 2	B	454	455	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7JRI

Analysis of interatomic Contacts of Structural Units in PDB entry:
7JRI