Analysis of interatomic Contacts of Structural Units in PDB entry:
7JRJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7JRJ entry

There are 15 chains in PDB entry 7JRJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
E	LEU 25	VAL 215
F	GLN 447	VAL 813
K	LEU 4	ILE 161
I	GLY 18	ALA 534
J	UNK 1	UNK 4
G	PRO 280	HIS 507
H	ALA 16	ALA 518
A	VAL 2	LEU 269
B	VAL 2	LEU 269
C	SER 6	LYS 451
D	ALA 3	ALA 429
L	UNK 500	UNK 505
M	UNK -4	UNK 0
N	UNK -88	UNK 0
O	UNK 351	UNK 825

There are 96 helices in PDB entry 7JRJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	F	460	467	Right-handed alpha
Helix 2	AA2	F	472	477	Right-handed alpha
Helix 3	AA3	F	480	512	Right-handed alpha
Helix 4	AA4	F	538	541	Right-handed 310
Helix 5	AA5	F	542	552	Right-handed alpha
Helix 6	AA6	F	720	725	Right-handed alpha
Helix 7	AA7	K	12	18	Right-handed alpha
Helix 8	AA8	K	20	31	Right-handed alpha
Helix 9	AA9	K	44	52	Right-handed alpha
Helix 10	AB1	K	53	56	Right-handed 310
Helix 11	AB2	K	60	66	Right-handed alpha
Helix 12	AB3	K	82	92	Right-handed alpha
Helix 13	AB4	K	95	103	Right-handed alpha
Helix 14	AB5	K	107	112	Right-handed alpha
Helix 15	AB6	K	125	137	Right-handed alpha
Helix 16	AB7	K	143	148	Right-handed alpha
Helix 17	AB8	K	151	161	Right-handed alpha
Helix 18	AB9	I	19	31	Right-handed alpha
Helix 19	AC1	I	35	98	Right-handed alpha
Helix 20	AC2	I	102	118	Right-handed alpha
Helix 21	AC3	I	194	198	Right-handed 310
Helix 22	AC4	I	210	214	Right-handed 310
Helix 23	AC5	I	237	239	Right-handed 310
Helix 24	AC6	I	240	245	Right-handed alpha
Helix 25	AC7	I	254	258	Right-handed 310
Helix 26	AC8	I	305	333	Right-handed alpha
Helix 27	AC9	I	462	475	Right-handed alpha
Helix 28	AD1	I	475	485	Right-handed alpha
Helix 29	AD2	I	490	504	Right-handed alpha
Helix 30	AD3	I	513	518	Right-handed alpha
Helix 31	AD4	I	523	531	Right-handed alpha
Helix 32	AD5	G	281	353	Right-handed alpha
Helix 33	AD6	G	353	360	Right-handed alpha
Helix 34	AD7	G	369	389	Right-handed alpha
Helix 35	AD8	G	471	483	Right-handed alpha
Helix 36	AD9	G	486	499	Right-handed alpha
Helix 37	AE1	H	20	26	Right-handed alpha
Helix 38	AE2	H	52	57	Right-handed alpha
Helix 39	AE3	H	84	95	Right-handed alpha
Helix 40	AE4	H	97	117	Right-handed alpha
Helix 41	AE5	H	127	156	Right-handed alpha
Helix 42	AE6	H	161	173	Right-handed alpha
Helix 43	AE7	H	189	194	Right-handed alpha
Helix 44	AE8	H	207	226	Right-handed alpha
Helix 45	AE9	H	242	249	Right-handed alpha
Helix 46	AF1	H	249	269	Right-handed alpha
Helix 47	AF2	H	299	310	Right-handed alpha
Helix 48	AF3	H	342	350	Right-handed alpha
Helix 49	AF4	H	368	378	Right-handed alpha
Helix 50	AF5	H	414	426	Right-handed alpha
Helix 51	AF6	H	427	445	Right-handed alpha
Helix 52	AF7	H	448	459	Right-handed alpha
Helix 53	AF8	H	485	490	Right-handed alpha
Helix 54	AF9	H	496	500	Right-handed 310
Helix 55	AG1	H	507	515	Right-handed alpha
Helix 56	AG2	A	7	15	Right-handed alpha
Helix 57	AG3	A	23	41	Right-handed alpha
Helix 58	AG4	A	98	108	Right-handed alpha
Helix 59	AG5	A	149	164	Right-handed alpha
Helix 60	AG6	A	194	196	Right-handed 310
Helix 61	AG7	A	210	214	Right-handed 310
Helix 62	AG8	A	264	269	Right-handed alpha
Helix 63	AG9	B	7	15	Right-handed alpha
Helix 64	AH1	B	23	41	Right-handed alpha
Helix 65	AH2	B	98	108	Right-handed alpha
Helix 66	AH3	B	149	164	Right-handed alpha
Helix 67	AH4	B	194	196	Right-handed 310
Helix 68	AH5	B	210	214	Right-handed 310
Helix 69	AH6	B	264	269	Right-handed alpha
Helix 70	AH7	C	7	15	Right-handed alpha
Helix 71	AH8	C	24	40	Right-handed alpha
Helix 72	AH9	C	46	56	Right-handed alpha
Helix 73	AI1	C	76	84	Right-handed alpha
Helix 74	AI2	C	113	125	Right-handed alpha
Helix 75	AI3	C	130	145	Right-handed alpha
Helix 76	AI4	C	235	243	Right-handed alpha
Helix 77	AI5	C	266	283	Right-handed alpha
Helix 78	AI6	C	309	313	Right-handed 310
Helix 79	AI7	C	315	317	Right-handed 310
Helix 80	AI8	C	439	443	Right-handed 310
Helix 81	AI9	D	4	15	Right-handed alpha
Helix 82	AJ1	D	22	37	Right-handed alpha
Helix 83	AJ2	D	41	49	Right-handed alpha
Helix 84	AJ3	D	68	80	Right-handed alpha
Helix 85	AJ4	D	109	121	Right-handed alpha
Helix 86	AJ5	D	125	142	Right-handed alpha
Helix 87	AJ6	D	191	196	Right-handed 310
Helix 88	AJ7	D	215	223	Right-handed alpha
Helix 89	AJ8	D	246	263	Right-handed alpha
Helix 90	AJ9	D	289	297	Right-handed 310
Helix 91	AK1	D	333	337	Right-handed 310
Helix 92	AK2	D	345	349	Right-handed 310
Helix 93	AK3	O	352	372	Right-handed alpha
Helix 94	AK4	O	802	806	Right-handed 310
Helix 95	AK5	O	808	811	Right-handed 310
Helix 96	AK6	O	812	823	Right-handed alpha

There are 27 sheets in PDB entry 7JRJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	201	203	first strand
Strand 2	E	189	195	anti-parallel
Strand 3	E	208	209	anti-parallel

Back to list of sheets
Back to top of page

There are 16 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	201	203	first strand
Strand 2	E	189	195	anti-parallel
Strand 3	E	177	184	anti-parallel
Strand 4	E	163	168	anti-parallel
Strand 5	E	150	157	anti-parallel
Strand 6	E	141	147	anti-parallel
Strand 7	E	126	134	anti-parallel
Strand 8	E	117	123	anti-parallel
Strand 9	E	104	111	anti-parallel
Strand 10	E	94	99	anti-parallel
Strand 11	E	80	88	anti-parallel
Strand 12	E	71	77	anti-parallel
Strand 13	E	56	64	anti-parallel
Strand 14	E	46	53	anti-parallel
Strand 15	E	28	30	anti-parallel
Strand 16	M	-3	-2	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	523	528	first strand
Strand 2	F	452	457	anti-parallel
Strand 3	N	-7	-3	anti-parallel
Strand 4	N	-58	-54	anti-parallel
Strand 5	N	-48	-45	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	564	570	first strand
Strand 2	F	576	582	anti-parallel
Strand 3	F	592	593	anti-parallel
Strand 4	F	599	600	anti-parallel
Strand 5	F	608	616	anti-parallel
Strand 6	F	603	605	anti-parallel
Strand 7	F	588	589	anti-parallel

Back to list of sheets
Back to top of page

There are 11 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	585	586	first strand
Strand 2	F	576	582	anti-parallel
Strand 3	F	592	593	anti-parallel
Strand 4	F	599	600	anti-parallel
Strand 5	F	608	616	anti-parallel
Strand 6	F	622	628	anti-parallel
Strand 7	F	632	639	anti-parallel
Strand 8	F	645	650	anti-parallel
Strand 9	F	657	662	anti-parallel
Strand 10	F	668	674	anti-parallel
Strand 11	F	677	678	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	680	686	first strand
Strand 2	F	689	696	anti-parallel
Strand 3	F	699	708	anti-parallel
Strand 4	F	732	739	anti-parallel
Strand 5	F	775	777	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	680	686	first strand
Strand 2	F	689	696	anti-parallel
Strand 3	F	699	708	anti-parallel
Strand 4	F	732	739	anti-parallel
Strand 5	F	783	784	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	5	11	first strand
Strand 2	K	73	80	anti-parallel
Strand 3	K	34	41	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	216	217	first strand
Strand 2	I	199	205	anti-parallel
Strand 3	I	122	129	anti-parallel
Strand 4	I	286	293	anti-parallel
Strand 5	I	273	279	anti-parallel
Strand 6	I	250	252	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	32	35	first strand
Strand 2	H	38	40	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	381	384	first strand
Strand 2	H	356	359	parallel
Strand 3	H	334	337	parallel
Strand 4	H	286	290	parallel
Strand 5	H	231	236	parallel
Strand 6	H	177	180	parallel
Strand 7	H	44	47	parallel
Strand 8	H	465	467	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	313	315	first strand
Strand 2	H	324	327	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	93	first strand
Strand 2	A	81	85	anti-parallel
Strand 3	A	60	66	anti-parallel
Strand 4	A	45	52	anti-parallel
Strand 5	A	250	256	parallel
Strand 6	A	240	245	anti-parallel
Strand 7	A	229	234	anti-parallel
Strand 8	A	219	224	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	75	78	first strand
Strand 2	A	69	72	anti-parallel
Strand 3	A	179	182	anti-parallel
Strand 4	A	172	174	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	119	124	first strand
Strand 2	A	143	148	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	166	168	first strand
Strand 2	A	198	200	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	92	93	first strand
Strand 2	B	81	85	anti-parallel
Strand 3	B	60	66	anti-parallel
Strand 4	B	45	52	anti-parallel
Strand 5	B	250	256	parallel
Strand 6	B	240	245	anti-parallel
Strand 7	B	229	234	anti-parallel
Strand 8	B	219	224	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	75	78	first strand
Strand 2	B	69	72	anti-parallel
Strand 3	B	179	182	anti-parallel
Strand 4	B	172	174	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	119	124	first strand
Strand 2	B	143	148	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	166	168	first strand
Strand 2	B	198	200	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	229	230	first strand
Strand 2	C	217	221	anti-parallel
Strand 3	C	166	172	anti-parallel
Strand 4	C	154	161	anti-parallel
Strand 5	C	411	418	parallel
Strand 6	C	403	408	anti-parallel
Strand 7	C	393	397	anti-parallel
Strand 8	C	377	381	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	284	286	first strand
Strand 2	C	319	321	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	290	293	first strand
Strand 2	C	298	301	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	209	210	first strand
Strand 2	D	197	201	anti-parallel
Strand 3	D	163	170	anti-parallel
Strand 4	D	147	156	anti-parallel
Strand 5	D	400	406	parallel
Strand 6	D	391	395	anti-parallel
Strand 7	D	381	385	anti-parallel
Strand 8	D	365	369	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	264	266	first strand
Strand 2	D	299	301	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	270	272	first strand
Strand 2	D	279	281	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	-73	-71	first strand
Strand 2	N	-84	-81	anti-parallel
Strand 3	N	-27	-25	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7JRJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
7JRJ