Analysis of interatomic Contacts of Structural Units in PDB entry:
7JRL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7JRL entry

There is 1 chain in PDB entry 7JRL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 1231VAL 1687
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 7JRL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1264 1267Right-handed 310
Helix 2
AA2
A
1312 1314Right-handed 310
Helix 3
AA3
A
1379 1382Right-handed 310
Helix 4
AA4
A
1456 1469Right-handed alpha
Helix 5
AA5
A
1470 1474Right-handed 310
Helix 6
AA6
A
1475 1496Right-handed alpha
Helix 7
AA7
A
1497 1514Right-handed alpha
Helix 8
AA8
A
1528 1540Right-handed alpha
Helix 9
AA9
A
1546 1552Right-handed alpha
Helix 10
AB1
A
1566 1570Right-handed 310
Helix 11
AB2
A
1586 1590Right-handed 310
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There are 9 sheets in PDB entry 7JRL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1233 1235first strand
Strand 2
A
1254 1257anti-parallel
Strand 3
A
1261 1262anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1239 1242first strand
Strand 2
A
1295 1305parallel
Strand 3
A
1280 1289anti-parallel
Strand 4
A
1268 1272anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1308 1310first strand
Strand 2
A
1440 1449anti-parallel
Strand 3
A
1352 1356anti-parallel
Strand 4
A
1327 1328anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1308 1310first strand
Strand 2
A
1440 1449anti-parallel
Strand 3
A
1370 1377anti-parallel
Strand 4
A
1413 1418anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1318 1319first strand
Strand 2
A
1359 1364anti-parallel
Strand 3
A
1424 1430anti-parallel
Strand 4
A
1388 1395anti-parallel
Strand 5
A
1398 1402anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1318 1319first strand
Strand 2
A
1359 1364anti-parallel
Strand 3
A
1424 1430anti-parallel
Strand 4
A
1388 1395anti-parallel
Strand 5
A
1406 1407anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1337 1340first strand
Strand 2
A
1346 1349anti-parallel
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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1555 1557first strand
Strand 2
A
1575 1577parallel
Strand 3
A
1597 1609parallel
Strand 4
A
1677 1686parallel
Strand 5
A
1665 1674anti-parallel
Strand 6
A
1632 1638anti-parallel
Strand 7
A
1644 1649anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1616 1620first strand
Strand 2
A
1653 1657anti-parallel
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