Analysis of interatomic Contacts of Structural Units in PDB entry:
7JRO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7JRO entry

There are 10 chains in PDB entry 7JRO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
a
 MET 1SER 524
b
 ASP 12ILE 250
c
 MET 1ILE 265
d
 MET 1SER 76
e
 PRO 52GLY 145
f
 ASP 37GLU 95
g
 GLU 107PRO 180
h
 PRO 14ASP 62
i
 SER 2LYS 65
j
 TYR 47THR 93
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 7JRO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
a
1 9Right-handed alpha
Helix 2
AA2
a
12 43Right-handed alpha
Helix 3
AA3
a
53 71Right-handed alpha
Helix 4
AA4
a
73 78Right-handed alpha
Helix 5
AA5
a
80 86Right-handed alpha
Helix 6
AA6
a
86 91Right-handed alpha
Helix 7
AA7
a
97 121Right-handed alpha
Helix 8
AA8
a
144 174Right-handed alpha
Helix 9
AA9
a
180 184Right-handed 310
Helix 10
AB1
a
185 217Right-handed alpha
Helix 11
AB2
a
230 247Right-handed alpha
Helix 12
AB3
a
250 265Right-handed alpha
Helix 13
AB4
a
271 286Right-handed alpha
Helix 14
AB5
a
294 298Right-handed 310
Helix 15
AB6
a
300 328Right-handed alpha
Helix 16
AB7
a
337 362Right-handed alpha
Helix 17
AB8
a
362 370Right-handed alpha
Helix 18
AB9
a
372 400Right-handed alpha
Helix 19
AC1
a
408 426Right-handed alpha
Helix 20
AC2
a
427 437Right-handed alpha
Helix 21
AC3
a
446 448Right-handed 310
Helix 22
AC4
a
449 479Right-handed alpha
Helix 23
AC5
a
499 503Right-handed 310
Helix 24
AC6
b
26 60Right-handed alpha
Helix 25
AC7
b
78 105Right-handed alpha
Helix 26
AC8
b
147 151Right-handed 310
Helix 27
AC9
b
238 250Right-handed alpha
Helix 28
AD1
c
2 6Right-handed alpha
Helix 29
AD2
c
16 37Right-handed alpha
Helix 30
AD3
c
41 71Right-handed alpha
Helix 31
AD4
c
75 109Right-handed alpha
Helix 32
AD5
c
112 116Right-handed 310
Helix 33
AD6
c
131 156Right-handed alpha
Helix 34
AD7
c
160 186Right-handed alpha
Helix 35
AD8
c
194 228Right-handed alpha
Helix 36
AD9
c
236 263Right-handed alpha
Helix 37
AE1
d
2 26Right-handed alpha
Helix 38
AE2
d
35 40Right-handed alpha
Helix 39
AE3
d
42 53Right-handed alpha
Helix 40
AE4
d
65 70Right-handed alpha
Helix 41
AE5
e
56 68Right-handed alpha
Helix 42
AE6
e
72 76Right-handed 310
Helix 43
AE7
f
38 63Right-handed alpha
Helix 44
AE8
g
123 142Right-handed alpha
Helix 45
AE9
g
145 160Right-handed alpha
Helix 46
AF1
g
161 175Right-handed alpha
Helix 47
AF2
h
15 55Right-handed alpha
Helix 48
AF3
i
9 21Right-handed alpha
Helix 49
AF4
i
30 62Right-handed alpha
Helix 50
AF5
j
56 60Right-handed 310
Helix 51
AF6
j
63 79Right-handed alpha
Helix 52
AF7
j
80 92Right-handed alpha
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There are 5 sheets in PDB entry 7JRO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
a
496 497first strand
Strand 2
e
113 117anti-parallel
Strand 3
e
97 101anti-parallel
Strand 4
a
518 519parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
b
140 143first strand
Strand 2
b
124 127anti-parallel
Strand 3
b
115 119anti-parallel
Strand 4
b
175 179parallel
Strand 5
b
203 205anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
b
165 168first strand
Strand 2
b
232 237parallel
Strand 3
b
213 217anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
b
184 188first strand
Strand 2
b
193 197anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
e
123 124first strand
Strand 2
e
131 132anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il