Analysis of interatomic Contacts of Structural Units in PDB entry:
7JRP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7JRP entry

There are 30 chains in PDB entry 7JRP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 41	TYR 527
B	SER 50	LYS 506
C	THR 2	ASP 389
D	ALA 63	ASN 306
E	GLU 75	SER 148
F	SER 7	PRO 122
G	LYS 3	TYR 72
H	GLU 5	LYS 69
J	GLY 10	LEU 69
K	GLN 16	PRO 46
M	ALA 41	TYR 527
N	SER 50	HIS 504
O	THR 2	ASP 389
P	ALA 63	ASN 306
Q	GLU 75	SER 148
R	PHE 8	PRO 122
S	LYS 3	TYR 72
T	PRO 6	LYS 69
V	GLY 11	LEU 69
W	ILE 15	PRO 46
a	MET 1	SER 524
b	ASP 12	ILE 250
c	MET 1	ILE 265
d	MET 1	SER 76
e	PRO 52	GLY 145
f	ASP 37	GLU 95
g	GLU 107	PRO 180
h	PRO 14	ASP 62
i	SER 2	LYS 65
j	TYR 47	THR 93

There are228 helices in PDB entry 7JRP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	49	64	Right-handed alpha
Helix 2	AA2	A	68	72	Right-handed 310
Helix 3	AA3	A	134	144	Right-handed alpha
Helix 4	AA4	A	151	162	Right-handed alpha
Helix 5	AA5	A	185	199	Right-handed alpha
Helix 6	AA6	A	203	221	Right-handed alpha
Helix 7	AA7	A	225	238	Right-handed alpha
Helix 8	AA8	A	241	245	Right-handed 310
Helix 9	AA9	A	250	255	Right-handed alpha
Helix 10	AB1	A	258	270	Right-handed alpha
Helix 11	AB2	A	271	273	Right-handed 310
Helix 12	AB3	A	284	294	Right-handed alpha
Helix 13	AB4	A	305	312	Right-handed alpha
Helix 14	AB5	A	347	357	Right-handed alpha
Helix 15	AB6	A	373	383	Right-handed alpha
Helix 16	AB7	A	408	410	Right-handed 310
Helix 17	AB8	A	411	429	Right-handed alpha
Helix 18	AB9	A	431	450	Right-handed alpha
Helix 19	AC1	A	452	467	Right-handed alpha
Helix 20	AC2	A	472	482	Right-handed alpha
Helix 21	AC3	A	484	496	Right-handed alpha
Helix 22	AC4	A	514	522	Right-handed alpha
Helix 23	AC5	B	107	111	Right-handed 310
Helix 24	AC6	B	117	125	Right-handed alpha
Helix 25	AC7	B	134	145	Right-handed alpha
Helix 26	AC8	B	168	182	Right-handed alpha
Helix 27	AC9	B	186	203	Right-handed alpha
Helix 28	AD1	B	207	220	Right-handed alpha
Helix 29	AD2	B	232	239	Right-handed alpha
Helix 30	AD3	B	240	252	Right-handed alpha
Helix 31	AD4	B	253	255	Right-handed 310
Helix 32	AD5	B	265	274	Right-handed alpha
Helix 33	AD6	B	321	335	Right-handed alpha
Helix 34	AD7	B	352	360	Right-handed alpha
Helix 35	AD8	B	391	408	Right-handed alpha
Helix 36	AD9	B	413	432	Right-handed alpha
Helix 37	AE1	B	434	450	Right-handed alpha
Helix 38	AE2	B	454	465	Right-handed alpha
Helix 39	AE3	B	466	478	Right-handed alpha
Helix 40	AE4	B	490	493	Right-handed 310
Helix 41	AE5	B	495	502	Right-handed alpha
Helix 42	AE6	C	13	25	Right-handed alpha
Helix 43	AE7	C	36	58	Right-handed alpha
Helix 44	AE8	C	66	77	Right-handed alpha
Helix 45	AE9	C	80	110	Right-handed alpha
Helix 46	AF1	C	116	139	Right-handed alpha
Helix 47	AF2	C	143	156	Right-handed alpha
Helix 48	AF3	C	164	173	Right-handed alpha
Helix 49	AF4	C	178	211	Right-handed alpha
Helix 50	AF5	C	229	252	Right-handed alpha
Helix 51	AF6	C	259	264	Right-handed 310
Helix 52	AF7	C	278	280	Right-handed 310
Helix 53	AF8	C	281	291	Right-handed alpha
Helix 54	AF9	C	293	311	Right-handed alpha
Helix 55	AG1	C	312	314	Right-handed 310
Helix 56	AG2	C	321	324	Right-handed 310
Helix 57	AG3	C	325	348	Right-handed alpha
Helix 58	AG4	C	353	380	Right-handed alpha
Helix 59	AG5	C	382	387	Right-handed alpha
Helix 60	AG6	D	64	69	Right-handed alpha
Helix 61	AG7	D	87	101	Right-handed alpha
Helix 62	AG8	D	102	105	Right-handed 310
Helix 63	AG9	D	112	117	Right-handed 310
Helix 64	AH1	D	122	133	Right-handed alpha
Helix 65	AH2	D	162	170	Right-handed alpha
Helix 66	AH3	D	180	185	Right-handed alpha
Helix 67	AH4	D	187	198	Right-handed alpha
Helix 68	AH5	D	243	260	Right-handed alpha
Helix 69	AH6	D	262	292	Right-handed alpha
Helix 70	AH7	E	77	85	Right-handed alpha
Helix 71	AH8	E	107	137	Right-handed alpha
Helix 72	AH9	E	140	147	Right-handed alpha
Helix 73	AI1	F	14	32	Right-handed alpha
Helix 74	AI2	F	34	39	Right-handed 310
Helix 75	AI3	F	40	45	Right-handed alpha
Helix 76	AI4	F	45	54	Right-handed alpha
Helix 77	AI5	F	55	76	Right-handed alpha
Helix 78	AI6	F	80	86	Right-handed alpha
Helix 79	AI7	F	94	111	Right-handed alpha
Helix 80	AI8	G	23	27	Right-handed 310
Helix 81	AI9	G	29	40	Right-handed alpha
Helix 82	AJ1	G	41	71	Right-handed alpha
Helix 83	AJ2	H	8	18	Right-handed alpha
Helix 84	AJ3	H	21	39	Right-handed alpha
Helix 85	AJ4	H	45	68	Right-handed alpha
Helix 86	AJ5	J	11	21	Right-handed alpha
Helix 87	AJ6	J	23	54	Right-handed alpha
Helix 88	AJ7	J	58	62	Right-handed 310
Helix 89	AJ8	K	17	39	Right-handed alpha
Helix 90	AJ9	M	48	64	Right-handed alpha
Helix 91	AK1	M	83	87	Right-handed 310
Helix 92	AK2	M	124	128	Right-handed 310
Helix 93	AK3	M	134	144	Right-handed alpha
Helix 94	AK4	M	151	163	Right-handed alpha
Helix 95	AK5	M	185	199	Right-handed alpha
Helix 96	AK6	M	203	220	Right-handed alpha
Helix 97	AK7	M	224	238	Right-handed alpha
Helix 98	AK8	M	250	255	Right-handed alpha
Helix 99	AK9	M	259	270	Right-handed alpha
Helix 100	AL1	M	271	273	Right-handed 310
Helix 101	AL2	M	284	296	Right-handed alpha
Helix 102	AL3	M	305	312	Right-handed alpha
Helix 103	AL4	M	347	357	Right-handed alpha
Helix 104	AL5	M	373	383	Right-handed alpha
Helix 105	AL6	M	411	429	Right-handed alpha
Helix 106	AL7	M	431	450	Right-handed alpha
Helix 107	AL8	M	453	467	Right-handed alpha
Helix 108	AL9	M	472	482	Right-handed alpha
Helix 109	AM1	M	484	496	Right-handed alpha
Helix 110	AM2	M	514	522	Right-handed alpha
Helix 111	AM3	N	117	125	Right-handed alpha
Helix 112	AM4	N	134	146	Right-handed alpha
Helix 113	AM5	N	168	182	Right-handed alpha
Helix 114	AM6	N	186	203	Right-handed alpha
Helix 115	AM7	N	207	220	Right-handed alpha
Helix 116	AM8	N	232	239	Right-handed alpha
Helix 117	AM9	N	240	252	Right-handed alpha
Helix 118	AN1	N	253	255	Right-handed 310
Helix 119	AN2	N	265	278	Right-handed alpha
Helix 120	AN3	N	321	335	Right-handed alpha
Helix 121	AN4	N	352	362	Right-handed alpha
Helix 122	AN5	N	391	408	Right-handed alpha
Helix 123	AN6	N	413	432	Right-handed alpha
Helix 124	AN7	N	434	450	Right-handed alpha
Helix 125	AN8	N	454	465	Right-handed alpha
Helix 126	AN9	N	466	480	Right-handed alpha
Helix 127	AO1	N	490	493	Right-handed 310
Helix 128	AO2	N	495	501	Right-handed alpha
Helix 129	AO3	O	9	13	Right-handed 310
Helix 130	AO4	O	16	24	Right-handed alpha
Helix 131	AO5	O	34	58	Right-handed alpha
Helix 132	AO6	O	66	77	Right-handed alpha
Helix 133	AO7	O	80	109	Right-handed alpha
Helix 134	AO8	O	116	140	Right-handed alpha
Helix 135	AO9	O	143	156	Right-handed alpha
Helix 136	AP1	O	157	160	Right-handed 310
Helix 137	AP2	O	163	173	Right-handed alpha
Helix 138	AP3	O	178	210	Right-handed alpha
Helix 139	AP4	O	229	252	Right-handed alpha
Helix 140	AP5	O	259	264	Right-handed 310
Helix 141	AP6	O	278	280	Right-handed 310
Helix 142	AP7	O	281	291	Right-handed alpha
Helix 143	AP8	O	293	311	Right-handed alpha
Helix 144	AP9	O	321	324	Right-handed 310
Helix 145	AQ1	O	325	347	Right-handed alpha
Helix 146	AQ2	O	353	371	Right-handed alpha
Helix 147	AQ3	O	371	382	Right-handed alpha
Helix 148	AQ4	O	383	385	Right-handed 310
Helix 149	AQ5	P	64	69	Right-handed alpha
Helix 150	AQ6	P	87	102	Right-handed alpha
Helix 151	AQ7	P	112	117	Right-handed 310
Helix 152	AQ8	P	122	133	Right-handed alpha
Helix 153	AQ9	P	162	170	Right-handed alpha
Helix 154	AR1	P	187	198	Right-handed alpha
Helix 155	AR2	P	243	260	Right-handed alpha
Helix 156	AR3	P	262	297	Right-handed alpha
Helix 157	AR4	Q	80	85	Right-handed alpha
Helix 158	AR5	Q	109	138	Right-handed alpha
Helix 159	AR6	Q	140	147	Right-handed alpha
Helix 160	AR7	R	14	32	Right-handed alpha
Helix 161	AR8	R	35	39	Right-handed 310
Helix 162	AR9	R	40	45	Right-handed alpha
Helix 163	AS1	R	45	54	Right-handed alpha
Helix 164	AS2	R	55	76	Right-handed alpha
Helix 165	AS3	R	80	86	Right-handed alpha
Helix 166	AS4	R	94	111	Right-handed alpha
Helix 167	AS5	S	17	20	Right-handed 310
Helix 168	AS6	S	29	71	Right-handed alpha
Helix 169	AS7	T	8	18	Right-handed alpha
Helix 170	AS8	T	21	39	Right-handed alpha
Helix 171	AS9	T	45	60	Right-handed alpha
Helix 172	AT1	T	60	68	Right-handed alpha
Helix 173	AT2	V	12	21	Right-handed alpha
Helix 174	AT3	V	23	54	Right-handed alpha
Helix 175	AT4	W	16	38	Right-handed alpha
Helix 176	AT5	W	40	45	Right-handed alpha
Helix 177	AT6	a	2	9	Right-handed alpha
Helix 178	AT7	a	12	43	Right-handed alpha
Helix 179	AT8	a	53	71	Right-handed alpha
Helix 180	AT9	a	73	78	Right-handed alpha
Helix 181	AU1	a	80	86	Right-handed alpha
Helix 182	AU2	a	86	91	Right-handed alpha
Helix 183	AU3	a	97	121	Right-handed alpha
Helix 184	AU4	a	144	174	Right-handed alpha
Helix 185	AU5	a	180	184	Right-handed 310
Helix 186	AU6	a	185	217	Right-handed alpha
Helix 187	AU7	a	230	247	Right-handed alpha
Helix 188	AU8	a	250	265	Right-handed alpha
Helix 189	AU9	a	271	286	Right-handed alpha
Helix 190	AV1	a	294	298	Right-handed 310
Helix 191	AV2	a	300	328	Right-handed alpha
Helix 192	AV3	a	337	362	Right-handed alpha
Helix 193	AV4	a	362	370	Right-handed alpha
Helix 194	AV5	a	372	400	Right-handed alpha
Helix 195	AV6	a	408	426	Right-handed alpha
Helix 196	AV7	a	427	437	Right-handed alpha
Helix 197	AV8	a	446	448	Right-handed 310
Helix 198	AV9	a	449	479	Right-handed alpha
Helix 199	AW1	a	499	503	Right-handed 310
Helix 200	AW2	b	26	60	Right-handed alpha
Helix 201	AW3	b	78	105	Right-handed alpha
Helix 202	AW4	b	147	151	Right-handed 310
Helix 203	AW5	b	238	250	Right-handed alpha
Helix 204	AW6	c	2	6	Right-handed alpha
Helix 205	AW7	c	16	37	Right-handed alpha
Helix 206	AW8	c	41	71	Right-handed alpha
Helix 207	AW9	c	75	109	Right-handed alpha
Helix 208	AX1	c	112	116	Right-handed 310
Helix 209	AX2	c	131	156	Right-handed alpha
Helix 210	AX3	c	160	186	Right-handed alpha
Helix 211	AX4	c	194	228	Right-handed alpha
Helix 212	AX5	c	236	263	Right-handed alpha
Helix 213	AX6	d	2	26	Right-handed alpha
Helix 214	AX7	d	35	40	Right-handed alpha
Helix 215	AX8	d	42	53	Right-handed alpha
Helix 216	AX9	d	65	70	Right-handed alpha
Helix 217	AY1	e	56	68	Right-handed alpha
Helix 218	AY2	e	72	76	Right-handed 310
Helix 219	AY3	f	38	63	Right-handed alpha
Helix 220	AY4	g	123	142	Right-handed alpha
Helix 221	AY5	g	145	160	Right-handed alpha
Helix 222	AY6	g	161	175	Right-handed alpha
Helix 223	AY7	h	15	55	Right-handed alpha
Helix 224	AY8	i	9	21	Right-handed alpha
Helix 225	AY9	i	30	62	Right-handed alpha
Helix 226	AZ1	j	56	60	Right-handed 310
Helix 227	AZ2	j	63	79	Right-handed alpha
Helix 228	AZ3	j	80	92	Right-handed alpha

There are 22 sheets in PDB entry 7JRP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	98	first strand
Strand 2	A	102	108	anti-parallel
Strand 3	A	275	281	parallel
Strand 4	A	114	121	anti-parallel
Strand 5	A	175	182	anti-parallel
Strand 6	A	165	170	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	361	362	first strand
Strand 2	A	387	388	anti-parallel
Strand 3	A	405	407	anti-parallel
Strand 4	A	332	339	anti-parallel
Strand 5	A	399	402	anti-parallel
Strand 6	A	391	394	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	361	362	first strand
Strand 2	A	387	388	anti-parallel
Strand 3	A	405	407	anti-parallel
Strand 4	A	332	339	anti-parallel
Strand 5	A	502	507	anti-parallel
Strand 6	A	320	325	parallel
Strand 7	G	11	15	anti-parallel
Strand 8	D	299	301	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	78	82	first strand
Strand 2	B	86	90	anti-parallel
Strand 3	B	257	261	parallel
Strand 4	B	97	104	anti-parallel
Strand 5	B	158	165	anti-parallel
Strand 6	B	148	153	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	221	223	first strand
Strand 2	B	291	293	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	296	301	first strand
Strand 2	B	483	488	parallel
Strand 3	B	307	312	anti-parallel
Strand 4	B	378	387	anti-parallel
Strand 5	B	367	375	anti-parallel
Strand 6	B	336	338	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	29	first strand
Strand 2	C	224	226	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	134	139	first strand
Strand 2	D	145	149	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	213	214	first strand
Strand 2	D	222	223	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	94	98	first strand
Strand 2	M	102	108	anti-parallel
Strand 3	M	275	281	parallel
Strand 4	M	114	121	anti-parallel
Strand 5	M	175	182	anti-parallel
Strand 6	M	165	170	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	361	362	first strand
Strand 2	M	387	388	anti-parallel
Strand 3	M	405	407	anti-parallel
Strand 4	M	332	339	anti-parallel
Strand 5	M	399	402	anti-parallel
Strand 6	M	391	394	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	361	362	first strand
Strand 2	M	387	388	anti-parallel
Strand 3	M	405	407	anti-parallel
Strand 4	M	332	339	anti-parallel
Strand 5	M	502	507	anti-parallel
Strand 6	M	320	325	parallel
Strand 7	S	11	15	anti-parallel
Strand 8	P	298	301	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	78	82	first strand
Strand 2	N	86	90	anti-parallel
Strand 3	N	257	261	parallel
Strand 4	N	97	104	anti-parallel
Strand 5	N	158	165	anti-parallel
Strand 6	N	148	153	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	297	301	first strand
Strand 2	N	483	488	parallel
Strand 3	N	307	313	anti-parallel
Strand 4	N	378	387	anti-parallel
Strand 5	N	367	375	anti-parallel
Strand 6	N	336	338	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	27	29	first strand
Strand 2	O	224	226	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	134	137	first strand
Strand 2	P	146	149	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	213	214	first strand
Strand 2	P	222	223	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	496	497	first strand
Strand 2	e	113	117	anti-parallel
Strand 3	e	97	101	anti-parallel
Strand 4	a	518	519	parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	140	143	first strand
Strand 2	b	124	127	anti-parallel
Strand 3	b	115	119	anti-parallel
Strand 4	b	175	179	parallel
Strand 5	b	203	205	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	165	168	first strand
Strand 2	b	232	237	parallel
Strand 3	b	213	217	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	184	188	first strand
Strand 2	b	193	197	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	123	124	first strand
Strand 2	e	131	132	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7JRP

Analysis of interatomic Contacts of Structural Units in PDB entry:
7JRP