Analysis of interatomic Contacts of Structural Units in PDB entry:
7JS3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7JS3 entry

There are 4 chains in PDB entry 7JS3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 4	SER 328
B	LYS 4	SER 328
C	LYS 4	SER 328
D	LYS 4	SER 328

There are 51 helices in PDB entry 7JS3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	7	23	Right-handed alpha
Helix 2	AA2	A	28	45	Right-handed alpha
Helix 3	AA3	A	88	95	Right-handed alpha
Helix 4	AA4	A	139	151	Right-handed alpha
Helix 5	AA5	A	154	157	Right-handed 310
Helix 6	AA6	A	165	167	Right-handed 310
Helix 7	AA7	A	168	178	Right-handed alpha
Helix 8	AA8	A	188	195	Right-handed alpha
Helix 9	AA9	A	196	198	Right-handed 310
Helix 10	AB1	A	212	226	Right-handed alpha
Helix 11	AB2	A	237	246	Right-handed alpha
Helix 12	AB3	A	258	262	Right-handed alpha
Helix 13	AB4	A	322	327	Right-handed 310
Helix 14	AB5	B	5	7	Right-handed 310
Helix 15	AB6	B	8	23	Right-handed alpha
Helix 16	AB7	B	28	45	Right-handed alpha
Helix 17	AB8	B	88	95	Right-handed alpha
Helix 18	AB9	B	139	152	Right-handed alpha
Helix 19	AC1	B	154	157	Right-handed 310
Helix 20	AC2	B	165	167	Right-handed 310
Helix 21	AC3	B	168	178	Right-handed alpha
Helix 22	AC4	B	188	195	Right-handed alpha
Helix 23	AC5	B	196	198	Right-handed 310
Helix 24	AC6	B	212	226	Right-handed alpha
Helix 25	AC7	B	237	246	Right-handed alpha
Helix 26	AC8	B	258	262	Right-handed alpha
Helix 27	AC9	B	322	327	Right-handed 310
Helix 28	AD1	C	6	8	Right-handed 310
Helix 29	AD2	C	9	23	Right-handed alpha
Helix 30	AD3	C	28	45	Right-handed alpha
Helix 31	AD4	C	139	152	Right-handed alpha
Helix 32	AD5	C	165	167	Right-handed 310
Helix 33	AD6	C	168	178	Right-handed alpha
Helix 34	AD7	C	188	195	Right-handed alpha
Helix 35	AD8	C	212	226	Right-handed alpha
Helix 36	AD9	C	238	246	Right-handed alpha
Helix 37	AE1	C	258	262	Right-handed alpha
Helix 38	AE2	C	322	327	Right-handed 310
Helix 39	AE3	D	8	23	Right-handed alpha
Helix 40	AE4	D	28	46	Right-handed alpha
Helix 41	AE5	D	88	93	Right-handed alpha
Helix 42	AE6	D	130	134	Right-handed 310
Helix 43	AE7	D	139	152	Right-handed alpha
Helix 44	AE8	D	154	157	Right-handed 310
Helix 45	AE9	D	165	167	Right-handed 310
Helix 46	AF1	D	168	178	Right-handed alpha
Helix 47	AF2	D	188	195	Right-handed alpha
Helix 48	AF3	D	196	198	Right-handed 310
Helix 49	AF4	D	212	226	Right-handed alpha
Helix 50	AF5	D	237	246	Right-handed alpha
Helix 51	AF6	D	257	262	Right-handed alpha

There are 8 sheets in PDB entry 7JS3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 14 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	71	72	first strand
Strand 2	A	49	55	anti-parallel
Strand 3	A	77	87	parallel
Strand 4	A	100	106	anti-parallel
Strand 5	A	267	272	anti-parallel
Strand 6	A	291	302	anti-parallel
Strand 7	A	308	316	anti-parallel
Strand 8	D	307	316	anti-parallel
Strand 9	D	291	302	anti-parallel
Strand 10	D	267	272	anti-parallel
Strand 11	D	100	106	anti-parallel
Strand 12	D	77	84	anti-parallel
Strand 13	D	49	55	parallel
Strand 14	D	71	73	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	283	287	first strand
Strand 2	A	291	302	anti-parallel
Strand 3	A	308	316	anti-parallel
Strand 4	D	307	316	anti-parallel
Strand 5	D	291	302	anti-parallel
Strand 6	D	283	287	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	181	185	first strand
Strand 2	A	159	163	parallel
Strand 3	A	205	211	parallel
Strand 4	A	118	125	anti-parallel
Strand 5	A	227	234	anti-parallel
Strand 6	A	255	257	anti-parallel

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There are 14 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	71	72	first strand
Strand 2	B	50	55	anti-parallel
Strand 3	B	78	87	parallel
Strand 4	B	100	106	anti-parallel
Strand 5	B	267	272	anti-parallel
Strand 6	B	292	302	anti-parallel
Strand 7	B	308	316	anti-parallel
Strand 8	C	308	316	anti-parallel
Strand 9	C	291	302	anti-parallel
Strand 10	C	267	272	anti-parallel
Strand 11	C	100	106	anti-parallel
Strand 12	C	78	87	anti-parallel
Strand 13	C	50	55	parallel
Strand 14	C	71	73	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	283	286	first strand
Strand 2	B	292	302	anti-parallel
Strand 3	B	308	316	anti-parallel
Strand 4	C	308	316	anti-parallel
Strand 5	C	291	302	anti-parallel
Strand 6	C	283	287	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	181	185	first strand
Strand 2	B	159	163	parallel
Strand 3	B	205	211	parallel
Strand 4	B	118	125	anti-parallel
Strand 5	B	227	233	anti-parallel
Strand 6	B	255	257	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	181	185	first strand
Strand 2	C	159	163	parallel
Strand 3	C	205	211	parallel
Strand 4	C	118	124	anti-parallel
Strand 5	C	228	234	anti-parallel
Strand 6	C	255	257	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	181	185	first strand
Strand 2	D	159	163	parallel
Strand 3	D	205	211	parallel
Strand 4	D	118	124	anti-parallel
Strand 5	D	228	233	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7JS3

Analysis of interatomic Contacts of Structural Units in PDB entry:
7JS3