Analysis of interatomic Contacts of Structural Units in PDB entry:
7JS4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7JS4 entry

There is 1 chain in PDB entry 7JS4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 493	ALA 1452

There are 27 helices in PDB entry 7JS4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	505	513	Right-handed alpha
Helix 2	AA2	A	601	605	Right-handed 310
Helix 3	AA3	A	628	646	Right-handed alpha
Helix 4	AA4	A	666	678	Right-handed alpha
Helix 5	AA5	A	680	699	Right-handed alpha
Helix 6	AA6	A	705	709	Right-handed 310
Helix 7	AA7	A	741	748	Right-handed alpha
Helix 8	AA8	A	751	763	Right-handed alpha
Helix 9	AA9	A	772	774	Right-handed 310
Helix 10	AB1	A	775	786	Right-handed alpha
Helix 11	AB2	A	789	794	Right-handed alpha
Helix 12	AB3	A	795	800	Right-handed alpha
Helix 13	AB4	A	801	806	Right-handed alpha
Helix 14	AB5	A	823	826	Right-handed 310
Helix 15	AB6	A	827	837	Right-handed alpha
Helix 16	AB7	A	839	851	Right-handed alpha
Helix 17	AB8	A	857	874	Right-handed alpha
Helix 18	AB9	A	877	885	Right-handed alpha
Helix 19	AC1	A	889	897	Right-handed alpha
Helix 20	AC2	A	905	909	Right-handed 310
Helix 21	AC3	A	910	914	Right-handed 310
Helix 22	AC4	A	946	949	Right-handed 310
Helix 23	AC5	A	1040	1043	Right-handed 310
Helix 24	AC6	A	1088	1090	Right-handed 310
Helix 25	AC7	A	1156	1159	Right-handed 310
Helix 26	AC8	A	1312	1314	Right-handed 310
Helix 27	AC9	A	1379	1385	Right-handed 310

There are 19 sheets in PDB entry 7JS4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	498	499	first strand
Strand 2	A	610	614	anti-parallel
Strand 3	A	533	539	anti-parallel
Strand 4	A	569	574	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	562	565	first strand
Strand 2	A	548	553	anti-parallel
Strand 3	A	593	598	anti-parallel
Strand 4	A	522	528	anti-parallel
Strand 5	A	617	618	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	621	623	first strand
Strand 2	A	654	657	parallel
Strand 3	A	662	665	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	716	719	first strand
Strand 2	A	734	737	parallel
Strand 3	A	728	731	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	927	934	first strand
Strand 2	A	937	944	anti-parallel
Strand 3	A	971	974	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	962	967	first strand
Strand 2	A	952	959	anti-parallel
Strand 3	A	984	991	anti-parallel
Strand 4	A	1000	1003	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1014	1015	first strand
Strand 2	A	1071	1080	parallel
Strand 3	A	1056	1065	anti-parallel
Strand 4	A	1044	1048	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1032	1033	first strand
Strand 2	A	1037	1038	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1085	1086	first strand
Strand 2	A	1217	1226	anti-parallel
Strand 3	A	1127	1131	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1085	1086	first strand
Strand 2	A	1217	1226	anti-parallel
Strand 3	A	1147	1154	anti-parallel
Strand 4	A	1190	1194	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1094	1097	first strand
Strand 2	A	1134	1139	anti-parallel
Strand 3	A	1201	1207	anti-parallel
Strand 4	A	1167	1172	anti-parallel
Strand 5	A	1175	1179	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1114	1117	first strand
Strand 2	A	1120	1123	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1233	1235	first strand
Strand 2	A	1254	1256	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1239	1242	first strand
Strand 2	A	1295	1305	parallel
Strand 3	A	1280	1289	anti-parallel
Strand 4	A	1268	1272	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1308	1310	first strand
Strand 2	A	1440	1449	anti-parallel
Strand 3	A	1352	1356	anti-parallel
Strand 4	A	1327	1328	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1308	1310	first strand
Strand 2	A	1440	1449	anti-parallel
Strand 3	A	1370	1377	anti-parallel
Strand 4	A	1413	1418	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1318	1320	first strand
Strand 2	A	1359	1364	anti-parallel
Strand 3	A	1424	1430	anti-parallel
Strand 4	A	1388	1395	anti-parallel
Strand 5	A	1398	1402	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1318	1320	first strand
Strand 2	A	1359	1364	anti-parallel
Strand 3	A	1424	1430	anti-parallel
Strand 4	A	1388	1395	anti-parallel
Strand 5	A	1406	1407	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1337	1340	first strand
Strand 2	A	1346	1349	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7JS4

Analysis of interatomic Contacts of Structural Units in PDB entry:
7JS4