Analysis of interatomic Contacts of Structural Units in PDB entry:
7JSD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7JSD entry

There are 4 chains in PDB entry 7JSD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 3	VAL 256
B	MET 1	VAL 256
C	ASP 2	HIS 257
D	VAL 3	GLY 235

There are 44 helices in PDB entry 7JSD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	4	16	Right-handed alpha
Helix 2	AA2	A	19	34	Right-handed alpha
Helix 3	AA3	A	46	65	Right-handed alpha
Helix 4	AA4	A	74	76	Right-handed 310
Helix 5	AA5	A	86	91	Right-handed alpha
Helix 6	AA6	A	93	101	Right-handed alpha
Helix 7	AA7	A	102	114	Right-handed alpha
Helix 8	AA8	A	122	125	Right-handed 310
Helix 9	AA9	A	158	162	Right-handed 310
Helix 10	AB1	A	179	187	Right-handed alpha
Helix 11	AB2	A	230	234	Right-handed 310
Helix 12	AB3	B	2	4	Right-handed 310
Helix 13	AB4	B	5	18	Right-handed alpha
Helix 14	AB5	B	19	34	Right-handed alpha
Helix 15	AB6	B	46	65	Right-handed alpha
Helix 16	AB7	B	74	76	Right-handed 310
Helix 17	AB8	B	86	91	Right-handed alpha
Helix 18	AB9	B	93	101	Right-handed alpha
Helix 19	AC1	B	102	114	Right-handed alpha
Helix 20	AC2	B	158	162	Right-handed 310
Helix 21	AC3	B	179	187	Right-handed alpha
Helix 22	AC4	B	230	234	Right-handed 310
Helix 23	AC5	C	4	18	Right-handed alpha
Helix 24	AC6	C	19	34	Right-handed alpha
Helix 25	AC7	C	46	65	Right-handed alpha
Helix 26	AC8	C	74	76	Right-handed 310
Helix 27	AC9	C	86	92	Right-handed alpha
Helix 28	AD1	C	93	101	Right-handed alpha
Helix 29	AD2	C	102	114	Right-handed alpha
Helix 30	AD3	C	122	125	Right-handed 310
Helix 31	AD4	C	158	162	Right-handed 310
Helix 32	AD5	C	179	187	Right-handed alpha
Helix 33	AD6	C	230	234	Right-handed 310
Helix 34	AD7	D	5	18	Right-handed alpha
Helix 35	AD8	D	19	34	Right-handed alpha
Helix 36	AD9	D	39	43	Right-handed 310
Helix 37	AE1	D	46	73	Right-handed alpha
Helix 38	AE2	D	86	92	Right-handed alpha
Helix 39	AE3	D	93	101	Right-handed alpha
Helix 40	AE4	D	102	114	Right-handed alpha
Helix 41	AE5	D	122	125	Right-handed 310
Helix 42	AE6	D	158	162	Right-handed 310
Helix 43	AE7	D	179	187	Right-handed alpha
Helix 44	AE8	D	230	234	Right-handed 310

There are 8 sheets in PDB entry 7JSD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	38	first strand
Strand 2	A	198	203	anti-parallel
Strand 3	A	148	155	anti-parallel
Strand 4	A	221	228	anti-parallel
Strand 5	A	127	132	anti-parallel
Strand 6	A	79	85	anti-parallel
Strand 7	A	66	72	anti-parallel
Strand 8	A	253	255	anti-parallel

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There are 13 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	38	first strand
Strand 2	A	198	203	anti-parallel
Strand 3	A	148	155	anti-parallel
Strand 4	A	221	228	anti-parallel
Strand 5	A	127	132	anti-parallel
Strand 6	A	79	85	anti-parallel
Strand 7	A	138	142	anti-parallel
Strand 8	A	208	211	anti-parallel
Strand 9	A	165	168	anti-parallel
Strand 10	A	188	192	anti-parallel
Strand 11	B	189	192	anti-parallel
Strand 12	B	165	168	anti-parallel
Strand 13	B	208	211	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	38	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	148	155	anti-parallel
Strand 4	B	221	228	anti-parallel
Strand 5	B	127	132	anti-parallel
Strand 6	B	79	85	anti-parallel
Strand 7	B	138	139	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	38	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	148	155	anti-parallel
Strand 4	B	221	228	anti-parallel
Strand 5	B	127	132	anti-parallel
Strand 6	B	79	85	anti-parallel
Strand 7	B	66	72	anti-parallel
Strand 8	B	253	255	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	38	first strand
Strand 2	C	198	203	anti-parallel
Strand 3	C	148	155	anti-parallel
Strand 4	C	221	228	anti-parallel
Strand 5	C	127	132	anti-parallel
Strand 6	C	79	85	anti-parallel
Strand 7	C	138	139	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	38	first strand
Strand 2	C	198	203	anti-parallel
Strand 3	C	148	155	anti-parallel
Strand 4	C	221	228	anti-parallel
Strand 5	C	127	132	anti-parallel
Strand 6	C	79	85	anti-parallel
Strand 7	C	66	72	anti-parallel
Strand 8	C	253	255	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	208	211	first strand
Strand 2	C	165	168	anti-parallel
Strand 3	C	189	192	anti-parallel
Strand 4	D	188	192	anti-parallel
Strand 5	D	165	168	anti-parallel
Strand 6	D	208	211	anti-parallel
Strand 7	D	139	142	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	35	38	first strand
Strand 2	D	198	203	anti-parallel
Strand 3	D	148	155	anti-parallel
Strand 4	D	221	228	anti-parallel
Strand 5	D	127	132	anti-parallel
Strand 6	D	83	85	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7JSD

Analysis of interatomic Contacts of Structural Units in PDB entry:
7JSD