Analysis of interatomic Contacts of Structural Units in PDB entry:
7JSF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7JSF entry

There are 8 chains in PDB entry 7JSF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 215	GLY 490
B	VAL 215	GLY 490
C	VAL 215	GLY 490
D	VAL 215	GLY 490
E	VAL 215	GLY 490
F	VAL 215	GLY 490
G	VAL 215	GLY 490
H	T 2	T 5

There are 77 helices in PDB entry 7JSF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	219	232	Right-handed alpha
Helix 2	AA2	A	239	246	Right-handed alpha
Helix 3	AA3	A	247	256	Right-handed alpha
Helix 4	AA4	A	260	277	Right-handed alpha
Helix 5	AA5	A	280	284	Right-handed 310
Helix 6	AA6	A	297	306	Right-handed alpha
Helix 7	AA7	A	311	321	Right-handed alpha
Helix 8	AA8	A	339	351	Right-handed alpha
Helix 9	AA9	A	386	395	Right-handed alpha
Helix 10	AB1	A	437	442	Right-handed alpha
Helix 11	AB2	A	463	476	Right-handed alpha
Helix 12	AB3	B	219	232	Right-handed alpha
Helix 13	AB4	B	239	246	Right-handed alpha
Helix 14	AB5	B	247	257	Right-handed alpha
Helix 15	AB6	B	261	277	Right-handed alpha
Helix 16	AB7	B	280	284	Right-handed 310
Helix 17	AB8	B	297	306	Right-handed alpha
Helix 18	AB9	B	311	321	Right-handed alpha
Helix 19	AC1	B	339	351	Right-handed alpha
Helix 20	AC2	B	386	395	Right-handed alpha
Helix 21	AC3	B	437	442	Right-handed alpha
Helix 22	AC4	B	463	476	Right-handed alpha
Helix 23	AC5	C	219	232	Right-handed alpha
Helix 24	AC6	C	239	246	Right-handed alpha
Helix 25	AC7	C	247	257	Right-handed alpha
Helix 26	AC8	C	261	277	Right-handed alpha
Helix 27	AC9	C	280	284	Right-handed 310
Helix 28	AD1	C	297	306	Right-handed alpha
Helix 29	AD2	C	311	321	Right-handed alpha
Helix 30	AD3	C	339	351	Right-handed alpha
Helix 31	AD4	C	386	395	Right-handed alpha
Helix 32	AD5	C	437	442	Right-handed alpha
Helix 33	AD6	C	463	476	Right-handed alpha
Helix 34	AD7	D	219	232	Right-handed alpha
Helix 35	AD8	D	239	246	Right-handed alpha
Helix 36	AD9	D	247	256	Right-handed alpha
Helix 37	AE1	D	261	277	Right-handed alpha
Helix 38	AE2	D	280	284	Right-handed 310
Helix 39	AE3	D	297	306	Right-handed alpha
Helix 40	AE4	D	311	321	Right-handed alpha
Helix 41	AE5	D	339	351	Right-handed alpha
Helix 42	AE6	D	386	396	Right-handed alpha
Helix 43	AE7	D	437	442	Right-handed alpha
Helix 44	AE8	D	463	476	Right-handed alpha
Helix 45	AE9	E	219	232	Right-handed alpha
Helix 46	AF1	E	239	246	Right-handed alpha
Helix 47	AF2	E	247	257	Right-handed alpha
Helix 48	AF3	E	262	277	Right-handed alpha
Helix 49	AF4	E	280	284	Right-handed 310
Helix 50	AF5	E	297	306	Right-handed alpha
Helix 51	AF6	E	311	321	Right-handed alpha
Helix 52	AF7	E	339	351	Right-handed alpha
Helix 53	AF8	E	386	395	Right-handed alpha
Helix 54	AF9	E	437	442	Right-handed alpha
Helix 55	AG1	E	463	476	Right-handed alpha
Helix 56	AG2	F	219	232	Right-handed alpha
Helix 57	AG3	F	239	246	Right-handed alpha
Helix 58	AG4	F	247	257	Right-handed alpha
Helix 59	AG5	F	261	277	Right-handed alpha
Helix 60	AG6	F	280	284	Right-handed 310
Helix 61	AG7	F	297	306	Right-handed alpha
Helix 62	AG8	F	311	321	Right-handed alpha
Helix 63	AG9	F	339	351	Right-handed alpha
Helix 64	AH1	F	386	395	Right-handed alpha
Helix 65	AH2	F	437	442	Right-handed alpha
Helix 66	AH3	F	463	476	Right-handed alpha
Helix 67	AH4	G	219	232	Right-handed alpha
Helix 68	AH5	G	239	246	Right-handed alpha
Helix 69	AH6	G	247	257	Right-handed alpha
Helix 70	AH7	G	261	277	Right-handed alpha
Helix 71	AH8	G	280	284	Right-handed 310
Helix 72	AH9	G	297	306	Right-handed alpha
Helix 73	AI1	G	311	321	Right-handed alpha
Helix 74	AI2	G	339	351	Right-handed alpha
Helix 75	AI3	G	386	395	Right-handed alpha
Helix 76	AI4	G	437	442	Right-handed alpha
Helix 77	AI5	G	463	476	Right-handed alpha

There are 21 sheets in PDB entry 7JSF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	357	first strand
Strand 2	A	374	377	parallel
Strand 3	A	416	418	parallel
Strand 4	A	329	333	parallel
Strand 5	A	447	449	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	399	400	first strand
Strand 2	A	410	411	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	427	429	first strand
Strand 2	A	432	434	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	354	357	first strand
Strand 2	B	374	377	parallel
Strand 3	B	416	418	parallel
Strand 4	B	329	333	parallel
Strand 5	B	447	449	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	399	400	first strand
Strand 2	B	410	411	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	427	429	first strand
Strand 2	B	432	434	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	354	357	first strand
Strand 2	C	374	377	parallel
Strand 3	C	416	418	parallel
Strand 4	C	329	333	parallel
Strand 5	C	447	449	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	399	400	first strand
Strand 2	C	410	411	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	427	429	first strand
Strand 2	C	432	434	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	354	357	first strand
Strand 2	D	374	377	parallel
Strand 3	D	416	418	parallel
Strand 4	D	329	333	parallel
Strand 5	D	447	449	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	399	402	first strand
Strand 2	D	408	411	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	427	429	first strand
Strand 2	D	432	434	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	354	357	first strand
Strand 2	E	374	377	parallel
Strand 3	E	416	418	parallel
Strand 4	E	329	333	parallel
Strand 5	E	447	449	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	399	400	first strand
Strand 2	E	410	411	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	427	429	first strand
Strand 2	E	432	434	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	354	357	first strand
Strand 2	F	374	377	parallel
Strand 3	F	416	418	parallel
Strand 4	F	329	333	parallel
Strand 5	F	447	449	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	399	400	first strand
Strand 2	F	410	411	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	427	429	first strand
Strand 2	F	432	434	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	354	357	first strand
Strand 2	G	374	377	parallel
Strand 3	G	416	418	parallel
Strand 4	G	329	333	parallel
Strand 5	G	447	449	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	399	400	first strand
Strand 2	G	410	411	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	427	429	first strand
Strand 2	G	432	434	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7JSF

Analysis of interatomic Contacts of Structural Units in PDB entry:
7JSF