Analysis of interatomic Contacts of Structural Units in PDB entry:
7JSH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7JSH entry

There are 8 chains in PDB entry 7JSH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 219	GLY 490
B	LYS 219	GLY 490
C	LYS 219	GLY 490
D	LYS 219	GLY 490
E	LYS 219	GLY 490
F	LYS 219	GLY 490
G	LYS 219	GLY 490
N	C 1	C 15

There are 78 helices in PDB entry 7JSH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	219	233	Right-handed alpha
Helix 2	AA2	A	238	245	Right-handed alpha
Helix 3	AA3	A	247	256	Right-handed alpha
Helix 4	AA4	A	260	276	Right-handed alpha
Helix 5	AA5	A	280	285	Right-handed alpha
Helix 6	AA6	A	296	306	Right-handed alpha
Helix 7	AA7	A	308	322	Right-handed alpha
Helix 8	AA8	A	339	351	Right-handed alpha
Helix 9	AA9	A	386	394	Right-handed alpha
Helix 10	AB1	A	437	444	Right-handed alpha
Helix 11	AB2	A	462	476	Right-handed alpha
Helix 12	AB3	B	220	233	Right-handed alpha
Helix 13	AB4	B	238	245	Right-handed alpha
Helix 14	AB5	B	247	256	Right-handed alpha
Helix 15	AB6	B	259	276	Right-handed alpha
Helix 16	AB7	B	280	285	Right-handed alpha
Helix 17	AB8	B	296	306	Right-handed alpha
Helix 18	AB9	B	308	322	Right-handed alpha
Helix 19	AC1	B	339	351	Right-handed alpha
Helix 20	AC2	B	386	392	Right-handed alpha
Helix 21	AC3	B	438	444	Right-handed alpha
Helix 22	AC4	B	462	476	Right-handed alpha
Helix 23	AC5	C	220	233	Right-handed alpha
Helix 24	AC6	C	238	246	Right-handed alpha
Helix 25	AC7	C	246	257	Right-handed alpha
Helix 26	AC8	C	260	278	Right-handed alpha
Helix 27	AC9	C	279	285	Right-handed alpha
Helix 28	AD1	C	296	306	Right-handed alpha
Helix 29	AD2	C	308	320	Right-handed alpha
Helix 30	AD3	C	335	338	Right-handed 310
Helix 31	AD4	C	339	351	Right-handed alpha
Helix 32	AD5	C	386	395	Right-handed alpha
Helix 33	AD6	C	438	444	Right-handed alpha
Helix 34	AD7	C	462	476	Right-handed alpha
Helix 35	AD8	D	220	233	Right-handed alpha
Helix 36	AD9	D	238	245	Right-handed alpha
Helix 37	AE1	D	247	256	Right-handed alpha
Helix 38	AE2	D	260	278	Right-handed alpha
Helix 39	AE3	D	292	295	Right-handed 310
Helix 40	AE4	D	296	306	Right-handed alpha
Helix 41	AE5	D	308	321	Right-handed alpha
Helix 42	AE6	D	335	338	Right-handed 310
Helix 43	AE7	D	339	350	Right-handed alpha
Helix 44	AE8	D	386	394	Right-handed alpha
Helix 45	AE9	D	437	444	Right-handed alpha
Helix 46	AF1	D	463	476	Right-handed alpha
Helix 47	AF2	E	220	235	Right-handed alpha
Helix 48	AF3	E	238	245	Right-handed alpha
Helix 49	AF4	E	247	256	Right-handed alpha
Helix 50	AF5	E	260	276	Right-handed alpha
Helix 51	AF6	E	281	285	Right-handed 310
Helix 52	AF7	E	296	306	Right-handed alpha
Helix 53	AF8	E	308	322	Right-handed alpha
Helix 54	AF9	E	340	351	Right-handed alpha
Helix 55	AG1	E	386	396	Right-handed alpha
Helix 56	AG2	E	437	444	Right-handed alpha
Helix 57	AG3	E	462	476	Right-handed alpha
Helix 58	AG4	F	220	233	Right-handed alpha
Helix 59	AG5	F	238	246	Right-handed alpha
Helix 60	AG6	F	247	256	Right-handed alpha
Helix 61	AG7	F	260	276	Right-handed alpha
Helix 62	AG8	F	280	285	Right-handed 310
Helix 63	AG9	F	296	306	Right-handed alpha
Helix 64	AH1	F	308	321	Right-handed alpha
Helix 65	AH2	F	339	350	Right-handed alpha
Helix 66	AH3	F	383	395	Right-handed alpha
Helix 67	AH4	F	438	444	Right-handed alpha
Helix 68	AH5	F	463	476	Right-handed alpha
Helix 69	AH6	G	220	235	Right-handed alpha
Helix 70	AH7	G	239	245	Right-handed alpha
Helix 71	AH8	G	246	256	Right-handed alpha
Helix 72	AH9	G	259	277	Right-handed alpha
Helix 73	AI1	G	296	306	Right-handed alpha
Helix 74	AI2	G	308	320	Right-handed alpha
Helix 75	AI3	G	340	351	Right-handed alpha
Helix 76	AI4	G	386	394	Right-handed alpha
Helix 77	AI5	G	437	444	Right-handed alpha
Helix 78	AI6	G	463	476	Right-handed alpha

There are 17 sheets in PDB entry 7JSH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	375	377	first strand
Strand 2	A	416	419	parallel
Strand 3	A	329	333	parallel
Strand 4	A	446	449	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	329	332	first strand
Strand 2	B	416	419	parallel
Strand 3	B	375	377	parallel
Strand 4	B	355	356	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	428	429	first strand
Strand 2	B	432	433	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	331	332	first strand
Strand 2	C	447	448	parallel
Strand 3	C	485	486	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	354	356	first strand
Strand 2	C	374	377	parallel
Strand 3	C	416	418	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	354	358	first strand
Strand 2	D	374	379	parallel
Strand 3	D	416	418	parallel
Strand 4	D	329	333	parallel
Strand 5	D	448	449	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	399	402	first strand
Strand 2	D	408	411	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	428	429	first strand
Strand 2	D	432	433	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	416	418	first strand
Strand 2	E	329	332	parallel
Strand 3	E	445	448	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	354	357	first strand
Strand 2	E	374	377	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	399	400	first strand
Strand 2	E	410	411	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	354	356	first strand
Strand 2	F	374	377	parallel
Strand 3	F	416	419	parallel
Strand 4	F	329	333	parallel
Strand 5	F	448	449	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	399	402	first strand
Strand 2	F	408	411	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	428	429	first strand
Strand 2	F	432	433	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	416	418	first strand
Strand 2	G	329	333	parallel
Strand 3	G	448	449	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	355	356	first strand
Strand 2	G	375	376	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	427	428	first strand
Strand 2	G	433	434	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7JSH

Analysis of interatomic Contacts of Structural Units in PDB entry:
7JSH