Analysis of interatomic Contacts of Structural Units in PDB entry:
7JSI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7JSI entry

There are 7 chains in PDB entry 7JSI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 215	GLY 490
B	VAL 215	GLY 490
C	VAL 215	GLY 490
D	VAL 215	GLY 490
E	VAL 215	GLY 490
F	VAL 215	GLY 490
H	T 1	T 8

There are 63 helices in PDB entry 7JSI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	219	235	Right-handed alpha
Helix 2	AA2	A	239	246	Right-handed alpha
Helix 3	AA3	A	247	257	Right-handed alpha
Helix 4	AA4	A	259	278	Right-handed alpha
Helix 5	AA5	A	279	285	Right-handed alpha
Helix 6	AA6	A	296	306	Right-handed alpha
Helix 7	AA7	A	308	322	Right-handed alpha
Helix 8	AA8	A	339	351	Right-handed alpha
Helix 9	AA9	A	383	395	Right-handed alpha
Helix 10	AB1	A	438	443	Right-handed alpha
Helix 11	AB2	A	464	475	Right-handed alpha
Helix 12	AB3	B	218	235	Right-handed alpha
Helix 13	AB4	B	239	257	Right-handed alpha
Helix 14	AB5	B	260	276	Right-handed alpha
Helix 15	AB6	B	280	284	Right-handed 310
Helix 16	AB7	B	296	305	Right-handed alpha
Helix 17	AB8	B	308	321	Right-handed alpha
Helix 18	AB9	B	339	351	Right-handed alpha
Helix 19	AC1	B	383	395	Right-handed alpha
Helix 20	AC2	B	437	444	Right-handed alpha
Helix 21	AC3	B	463	476	Right-handed alpha
Helix 22	AC4	C	219	233	Right-handed alpha
Helix 23	AC5	C	238	256	Right-handed alpha
Helix 24	AC6	C	260	277	Right-handed alpha
Helix 25	AC7	C	280	285	Right-handed 310
Helix 26	AC8	C	296	305	Right-handed alpha
Helix 27	AC9	C	308	321	Right-handed alpha
Helix 28	AD1	C	340	351	Right-handed alpha
Helix 29	AD2	C	386	395	Right-handed alpha
Helix 30	AD3	C	437	445	Right-handed alpha
Helix 31	AD4	C	462	476	Right-handed alpha
Helix 32	AD5	D	218	233	Right-handed alpha
Helix 33	AD6	D	238	257	Right-handed alpha
Helix 34	AD7	D	261	277	Right-handed alpha
Helix 35	AD8	D	280	284	Right-handed 310
Helix 36	AD9	D	296	306	Right-handed alpha
Helix 37	AE1	D	308	321	Right-handed alpha
Helix 38	AE2	D	335	338	Right-handed 310
Helix 39	AE3	D	339	351	Right-handed alpha
Helix 40	AE4	D	383	396	Right-handed alpha
Helix 41	AE5	D	438	444	Right-handed alpha
Helix 42	AE6	D	463	476	Right-handed alpha
Helix 43	AE7	E	218	235	Right-handed alpha
Helix 44	AE8	E	239	257	Right-handed alpha
Helix 45	AE9	E	261	278	Right-handed alpha
Helix 46	AF1	E	280	284	Right-handed 310
Helix 47	AF2	E	296	304	Right-handed alpha
Helix 48	AF3	E	308	321	Right-handed alpha
Helix 49	AF4	E	335	338	Right-handed 310
Helix 50	AF5	E	339	351	Right-handed alpha
Helix 51	AF6	E	386	395	Right-handed alpha
Helix 52	AF7	E	437	444	Right-handed alpha
Helix 53	AF8	E	462	476	Right-handed alpha
Helix 54	AF9	F	218	234	Right-handed alpha
Helix 55	AG1	F	239	256	Right-handed alpha
Helix 56	AG2	F	261	277	Right-handed alpha
Helix 57	AG3	F	280	285	Right-handed 310
Helix 58	AG4	F	297	306	Right-handed alpha
Helix 59	AG5	F	308	321	Right-handed alpha
Helix 60	AG6	F	339	351	Right-handed alpha
Helix 61	AG7	F	383	396	Right-handed alpha
Helix 62	AG8	F	437	444	Right-handed alpha
Helix 63	AG9	F	462	476	Right-handed alpha

There are 19 sheets in PDB entry 7JSI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	330	331	first strand
Strand 2	A	416	418	parallel
Strand 3	A	375	376	parallel
Strand 4	A	355	356	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	399	402	first strand
Strand 2	A	408	411	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	427	428	first strand
Strand 2	A	433	434	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	355	356	first strand
Strand 2	B	375	377	parallel
Strand 3	B	416	418	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	399	402	first strand
Strand 2	B	408	411	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	427	429	first strand
Strand 2	B	432	434	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	355	357	first strand
Strand 2	C	375	378	parallel
Strand 3	C	416	419	parallel
Strand 4	C	330	333	parallel
Strand 5	C	448	449	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	399	401	first strand
Strand 2	C	409	411	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	427	429	first strand
Strand 2	C	432	434	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	354	356	first strand
Strand 2	D	374	377	parallel
Strand 3	D	416	418	parallel
Strand 4	D	330	333	parallel
Strand 5	D	448	449	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	399	402	first strand
Strand 2	D	408	411	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	427	428	first strand
Strand 2	D	433	434	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	419	420	first strand
Strand 2	E	332	333	parallel
Strand 3	E	448	449	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	354	357	first strand
Strand 2	E	374	377	parallel
Strand 3	E	416	417	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	399	402	first strand
Strand 2	E	408	411	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	427	429	first strand
Strand 2	E	432	434	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	355	357	first strand
Strand 2	F	375	377	parallel
Strand 3	F	416	418	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	399	402	first strand
Strand 2	F	408	411	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	427	429	first strand
Strand 2	F	432	434	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7JSI

Analysis of interatomic Contacts of Structural Units in PDB entry:
7JSI