Analysis of interatomic Contacts of Structural Units in PDB entry:
7JSO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7JSO entry

There are 3 chains in PDB entry 7JSO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
THR 3LEU 497
B
THR 3LEU 497
C
THR 3SER 355
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are165 helices in PDB entry 7JSO. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
5 16Right-handed alpha
Helix 2
AA2
A
55 73Right-handed alpha
Helix 3
AA3
A
79 97Right-handed alpha
Helix 4
AA4
A
97 110Right-handed alpha
Helix 5
AA5
A
112 119Right-handed alpha
Helix 6
AA6
A
119 135Right-handed alpha
Helix 7
AA7
A
136 138Right-handed 310
Helix 8
AA8
A
169 184Right-handed alpha
Helix 9
AA9
A
197 211Right-handed alpha
Helix 10
AB1
A
226 234Right-handed alpha
Helix 11
AB2
A
245 259Right-handed alpha
Helix 12
AB3
A
282 296Right-handed alpha
Helix 13
AB4
A
297 300Right-handed 310
Helix 14
AB5
A
312 328Right-handed alpha
Helix 15
AB6
A
346 364Right-handed alpha
Helix 16
AB7
A
375 379Right-handed 310
Helix 17
AB8
A
395 400Right-handed alpha
Helix 18
AB9
A
414 424Right-handed alpha
Helix 19
AC1
A
437 448Right-handed alpha
Helix 20
AC2
A
470 472Right-handed 310
Helix 21
AC3
A
481 486Right-handed 310
Helix 22
AC4
B
5 15Right-handed alpha
Helix 23
AC5
B
55 73Right-handed alpha
Helix 24
AC6
B
79 97Right-handed alpha
Helix 25
AC7
B
97 110Right-handed alpha
Helix 26
AC8
B
112 119Right-handed alpha
Helix 27
AC9
B
119 134Right-handed alpha
Helix 28
AD1
B
169 184Right-handed alpha
Helix 29
AD2
B
197 210Right-handed alpha
Helix 30
AD3
B
226 234Right-handed alpha
Helix 31
AD4
B
245 259Right-handed alpha
Helix 32
AD5
B
282 296Right-handed alpha
Helix 33
AD6
B
297 300Right-handed 310
Helix 34
AD7
B
312 327Right-handed alpha
Helix 35
AD8
B
346 364Right-handed alpha
Helix 36
AD9
B
375 379Right-handed 310
Helix 37
AE1
B
395 400Right-handed alpha
Helix 38
AE2
B
414 424Right-handed alpha
Helix 39
AE3
B
437 448Right-handed alpha
Helix 40
AE4
B
470 474Right-handed 310
Helix 41
AE5
B
482 486Right-handed 310
Helix 42
AE6
C
5 16Right-handed alpha
Helix 43
AE7
C
55 73Right-handed alpha
Helix 44
AE8
C
79 97Right-handed alpha
Helix 45
AE9
C
97 110Right-handed alpha
Helix 46
AF1
C
112 119Right-handed alpha
Helix 47
AF2
C
119 135Right-handed alpha
Helix 48
AF3
C
136 138Right-handed 310
Helix 49
AF4
C
169 184Right-handed alpha
Helix 50
AF5
C
197 211Right-handed alpha
Helix 51
AF6
C
226 234Right-handed alpha
Helix 52
AF7
C
245 259Right-handed alpha
Helix 53
AF8
C
282 296Right-handed alpha
Helix 54
AF9
C
297 300Right-handed 310
Helix 55
AG1
C
312 328Right-handed alpha
Helix 56
AG2
C
346 364Right-handed alpha
Helix 57
AG3
C
375 379Right-handed 310
Helix 58
AG4
C
395 400Right-handed alpha
Helix 59
AG5
C
414 423Right-handed alpha
Helix 60
AG6
C
437 448Right-handed alpha
Helix 61
AG7
C
470 474Right-handed 310
Helix 62
AG8
C
480 486Right-handed 310
Helix 63
AG9
D
5 16Right-handed alpha
Helix 64
AH1
D
55 73Right-handed alpha
Helix 65
AH2
D
79 97Right-handed alpha
Helix 66
AH3
D
97 110Right-handed alpha
Helix 67
AH4
D
112 119Right-handed alpha
Helix 68
AH5
D
119 135Right-handed alpha
Helix 69
AH6
D
136 138Right-handed 310
Helix 70
AH7
D
169 184Right-handed alpha
Helix 71
AH8
D
197 211Right-handed alpha
Helix 72
AH9
D
226 234Right-handed alpha
Helix 73
AI1
D
245 259Right-handed alpha
Helix 74
AI2
D
282 296Right-handed alpha
Helix 75
AI3
D
297 300Right-handed 310
Helix 76
AI4
D
312 328Right-handed alpha
Helix 77
AI5
D
346 364Right-handed alpha
Helix 78
AI6
D
375 379Right-handed 310
Helix 79
AI7
D
395 400Right-handed alpha
Helix 80
AI8
D
414 424Right-handed alpha
Helix 81
AI9
D
437 448Right-handed alpha
Helix 82
AJ1
D
470 474Right-handed 310
Helix 83
AJ2
D
482 486Right-handed 310
Helix 84
AJ3
E
5 16Right-handed alpha
Helix 85
AJ4
E
55 73Right-handed alpha
Helix 86
AJ5
E
79 97Right-handed alpha
Helix 87
AJ6
E
97 110Right-handed alpha
Helix 88
AJ7
E
112 119Right-handed alpha
Helix 89
AJ8
E
119 134Right-handed alpha
Helix 90
AJ9
E
135 138Right-handed 310
Helix 91
AK1
E
169 184Right-handed alpha
Helix 92
AK2
E
197 211Right-handed alpha
Helix 93
AK3
E
226 233Right-handed alpha
Helix 94
AK4
E
245 259Right-handed alpha
Helix 95
AK5
E
282 296Right-handed alpha
Helix 96
AK6
E
297 300Right-handed 310
Helix 97
AK7
E
312 327Right-handed alpha
Helix 98
AK8
E
346 364Right-handed alpha
Helix 99
AK9
E
375 379Right-handed 310
Helix 100
AL1
E
395 400Right-handed alpha
Helix 101
AL2
E
414 424Right-handed alpha
Helix 102
AL3
E
437 448Right-handed alpha
Helix 103
AL4
E
470 474Right-handed 310
Helix 104
AL5
E
480 486Right-handed 310
Helix 105
AL6
F
5 16Right-handed alpha
Helix 106
AL7
F
55 73Right-handed alpha
Helix 107
AL8
F
79 97Right-handed alpha
Helix 108
AL9
F
97 110Right-handed alpha
Helix 109
AM1
F
112 119Right-handed alpha
Helix 110
AM2
F
119 135Right-handed alpha
Helix 111
AM3
F
136 138Right-handed 310
Helix 112
AM4
F
169 184Right-handed alpha
Helix 113
AM5
F
197 210Right-handed alpha
Helix 114
AM6
F
226 234Right-handed alpha
Helix 115
AM7
F
245 259Right-handed alpha
Helix 116
AM8
F
282 296Right-handed alpha
Helix 117
AM9
F
297 300Right-handed 310
Helix 118
AN1
F
312 328Right-handed alpha
Helix 119
AN2
F
346 364Right-handed alpha
Helix 120
AN3
F
375 379Right-handed 310
Helix 121
AN4
F
395 400Right-handed alpha
Helix 122
AN5
F
414 424Right-handed alpha
Helix 123
AN6
F
437 448Right-handed alpha
Helix 124
AN7
F
470 472Right-handed 310
Helix 125
AN8
F
480 486Right-handed 310
Helix 126
AN9
G
5 15Right-handed alpha
Helix 127
AO1
G
55 73Right-handed alpha
Helix 128
AO2
G
79 97Right-handed alpha
Helix 129
AO3
G
97 110Right-handed alpha
Helix 130
AO4
G
112 119Right-handed alpha
Helix 131
AO5
G
119 135Right-handed alpha
Helix 132
AO6
G
169 184Right-handed alpha
Helix 133
AO7
G
197 211Right-handed alpha
Helix 134
AO8
G
226 233Right-handed alpha
Helix 135
AO9
G
245 259Right-handed alpha
Helix 136
AP1
G
282 296Right-handed alpha
Helix 137
AP2
G
297 300Right-handed 310
Helix 138
AP3
G
312 328Right-handed alpha
Helix 139
AP4
G
346 364Right-handed alpha
Helix 140
AP5
G
395 400Right-handed alpha
Helix 141
AP6
G
414 424Right-handed alpha
Helix 142
AP7
G
437 448Right-handed alpha
Helix 143
AP8
G
470 474Right-handed 310
Helix 144
AP9
G
482 486Right-handed 310
Helix 145
AQ1
H
5 16Right-handed alpha
Helix 146
AQ2
H
55 73Right-handed alpha
Helix 147
AQ3
H
79 97Right-handed alpha
Helix 148
AQ4
H
97 110Right-handed alpha
Helix 149
AQ5
H
112 119Right-handed alpha
Helix 150
AQ6
H
119 135Right-handed alpha
Helix 151
AQ7
H
136 138Right-handed 310
Helix 152
AQ8
H
169 184Right-handed alpha
Helix 153
AQ9
H
197 211Right-handed alpha
Helix 154
AR1
H
226 234Right-handed alpha
Helix 155
AR2
H
245 259Right-handed alpha
Helix 156
AR3
H
282 296Right-handed alpha
Helix 157
AR4
H
297 300Right-handed 310
Helix 158
AR5
H
314 328Right-handed alpha
Helix 159
AR6
H
346 364Right-handed alpha
Helix 160
AR7
H
375 379Right-handed 310
Helix 161
AR8
H
395 400Right-handed alpha
Helix 162
AR9
H
414 424Right-handed alpha
Helix 163
AS1
H
437 447Right-handed alpha
Helix 164
AS2
H
470 474Right-handed 310
Helix 165
AS3
H
482 486Right-handed 310
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There are 41 sheets in PDB entry 7JSO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
22 24first strand
Strand 2
A
27 29anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
36 40first strand
Strand 2
A
47 52anti-parallel
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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
141 142first strand
Strand 2
A
149 157anti-parallel
Strand 3
A
488 496anti-parallel
Strand 4
C
452 455parallel
Strand 5
C
430 434parallel
Strand 6
C
273 276parallel
Strand 7
C
307 311parallel
Strand 8
C
406 412parallel
Strand 9
C
386 389parallel
Strand 10
C
366 369anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
217 219first strand
Strand 2
A
187 191parallel
Strand 3
A
160 164parallel
Strand 4
A
239 243parallel
Strand 5
A
263 267parallel
Strand 6
A
474 475anti-parallel
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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
366 369first strand
Strand 2
A
386 389anti-parallel
Strand 3
A
406 412parallel
Strand 4
A
307 311parallel
Strand 5
A
273 276parallel
Strand 6
A
430 434parallel
Strand 7
A
452 455parallel
Strand 8
C
488 496parallel
Strand 9
C
149 157anti-parallel
Strand 10
C
141 142anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
373 374first strand
Strand 2
A
382 383anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
22 24first strand
Strand 2
B
27 29anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
36 40first strand
Strand 2
B
47 52anti-parallel
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There are 10 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
141 142first strand
Strand 2
B
149 157anti-parallel
Strand 3
B
488 496anti-parallel
Strand 4
D
452 455parallel
Strand 5
D
430 434parallel
Strand 6
D
273 276parallel
Strand 7
D
307 311parallel
Strand 8
D
406 412parallel
Strand 9
D
386 389parallel
Strand 10
D
366 369anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
217 219first strand
Strand 2
B
187 191parallel
Strand 3
B
160 164parallel
Strand 4
B
239 243parallel
Strand 5
B
263 267parallel
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There are 10 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
366 369first strand
Strand 2
B
386 389anti-parallel
Strand 3
B
406 412parallel
Strand 4
B
307 311parallel
Strand 5
B
273 276parallel
Strand 6
B
430 434parallel
Strand 7
B
452 455parallel
Strand 8
D
488 496parallel
Strand 9
D
149 157anti-parallel
Strand 10
D
141 142anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
373 374first strand
Strand 2
B
382 383anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
22 23first strand
Strand 2
C
28 29anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
36 40first strand
Strand 2
C
47 52anti-parallel
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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
217 219first strand
Strand 2
C
187 191parallel
Strand 3
C
160 164parallel
Strand 4
C
239 243parallel
Strand 5
C
263 267parallel
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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
373 374first strand
Strand 2
C
382 383anti-parallel
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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
22 24first strand
Strand 2
D
27 29anti-parallel
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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
36 40first strand
Strand 2
D
47 52anti-parallel
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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
217 219first strand
Strand 2
D
187 191parallel
Strand 3
D
160 164parallel
Strand 4
D
239 242parallel
Strand 5
D
263 265parallel
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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
373 374first strand
Strand 2
D
382 383anti-parallel
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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
22 24first strand
Strand 2
E
27 29anti-parallel
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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
36 40first strand
Strand 2
E
47 52anti-parallel
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There are 13 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
488 496first strand
Strand 2
G
149 157anti-parallel
Strand 3
G
139 142anti-parallel
Strand 4
E
140 143anti-parallel
Strand 5
E
149 157anti-parallel
Strand 6
E
488 496anti-parallel
Strand 7
H
452 455parallel
Strand 8
H
430 434parallel
Strand 9
H
273 276parallel
Strand 10
H
307 311parallel
Strand 11
H
406 412parallel
Strand 12
H
386 389parallel
Strand 13
H
366 369anti-parallel
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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
217 219first strand
Strand 2
E
187 191parallel
Strand 3
E
160 164parallel
Strand 4
E
239 243parallel
Strand 5
E
263 267parallel
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There are 10 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
366 369first strand
Strand 2
E
386 389anti-parallel
Strand 3
E
406 412parallel
Strand 4
E
307 311parallel
Strand 5
E
273 276parallel
Strand 6
E
432 434parallel
Strand 7
E
452 455parallel
Strand 8
H
488 496parallel
Strand 9
H
149 157anti-parallel
Strand 10
H
141 142anti-parallel
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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
373 374first strand
Strand 2
E
382 383anti-parallel
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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
22 24first strand
Strand 2
F
27 29anti-parallel
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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
36 40first strand
Strand 2
F
47 52anti-parallel
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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
141 142first strand
Strand 2
F
149 157anti-parallel
Strand 3
F
488 496anti-parallel
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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
217 219first strand
Strand 2
F
187 191parallel
Strand 3
F
160 164parallel
Strand 4
F
239 243parallel
Strand 5
F
263 267parallel
Strand 6
F
474 475anti-parallel
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There are 7 strands in AD4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
366 369first strand
Strand 2
F
386 389anti-parallel
Strand 3
F
406 412parallel
Strand 4
F
307 311parallel
Strand 5
F
273 276parallel
Strand 6
F
430 434parallel
Strand 7
F
452 455parallel
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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
373 374first strand
Strand 2
F
382 383anti-parallel
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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
22 24first strand
Strand 2
G
27 29anti-parallel
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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
36 40first strand
Strand 2
G
47 52anti-parallel
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There are 5 strands in AD8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
217 219first strand
Strand 2
G
187 191parallel
Strand 3
G
160 164parallel
Strand 4
G
239 243parallel
Strand 5
G
263 267parallel
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There are 7 strands in AD9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
366 369first strand
Strand 2
G
386 389anti-parallel
Strand 3
G
406 412parallel
Strand 4
G
307 311parallel
Strand 5
G
273 276parallel
Strand 6
G
430 434parallel
Strand 7
G
452 455parallel
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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
373 374first strand
Strand 2
G
382 383anti-parallel
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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
22 24first strand
Strand 2
H
27 29anti-parallel
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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
36 40first strand
Strand 2
H
47 52anti-parallel
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There are 5 strands in AE4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
217 219first strand
Strand 2
H
187 191parallel
Strand 3
H
160 164parallel
Strand 4
H
239 243parallel
Strand 5
H
263 267parallel
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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
373 374first strand
Strand 2
H
382 383anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il