Analysis of interatomic Contacts of Structural Units in PDB entry:
7JTF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7JTF entry

There are 6 chains in PDB entry 7JTF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 4	LYS 214
B	ILE 2	GLY 212
E	HIS 421	ASN 645
C	LEU 4	LYS 214
D	ILE 2	GLY 212
F	HIS 421	ASN 645

There are 22 helices in PDB entry 7JTF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	83	87	Right-handed 310
Helix 2	AA2	A	156	158	Right-handed 310
Helix 3	AA3	A	185	189	Right-handed 310
Helix 4	AA4	B	121	126	Right-handed alpha
Helix 5	AA5	B	183	188	Right-handed alpha
Helix 6	AA6	E	438	443	Right-handed alpha
Helix 7	AA7	E	540	543	Right-handed 310
Helix 8	AA8	E	613	618	Right-handed alpha
Helix 9	AA9	E	619	622	Right-handed 310
Helix 10	AB1	C	61	64	Right-handed 310
Helix 11	AB2	C	83	87	Right-handed 310
Helix 12	AB3	C	156	158	Right-handed 310
Helix 13	AB4	C	186	191	Right-handed 310
Helix 14	AB5	C	201	204	Right-handed 310
Helix 15	AB6	D	79	83	Right-handed 310
Helix 16	AB7	D	121	126	Right-handed alpha
Helix 17	AB8	D	183	189	Right-handed alpha
Helix 18	AB9	F	421	425	Right-handed 310
Helix 19	AC1	F	438	443	Right-handed alpha
Helix 20	AC2	F	540	543	Right-handed 310
Helix 21	AC3	F	613	618	Right-handed alpha
Helix 22	AC4	F	619	622	Right-handed 310

There are 31 sheets in PDB entry 7JTF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	12	first strand
Strand 2	A	107	111	parallel
Strand 3	A	88	95	anti-parallel
Strand 4	A	33	39	anti-parallel
Strand 5	A	45	46	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	12	first strand
Strand 2	A	107	111	parallel
Strand 3	A	88	95	anti-parallel
Strand 4	A	100	102	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	18	20	first strand
Strand 2	A	79	82	anti-parallel
Strand 3	A	67	70	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	51	51	first strand
Strand 2	A	58	59	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	120	124	first strand
Strand 2	A	138	145	anti-parallel
Strand 3	A	176	182	anti-parallel
Strand 4	A	163	165	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	120	124	first strand
Strand 2	A	138	145	anti-parallel
Strand 3	A	176	182	anti-parallel
Strand 4	A	169	170	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	151	154	first strand
Strand 2	A	194	200	anti-parallel
Strand 3	A	205	211	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	5	first strand
Strand 2	B	19	29	anti-parallel
Strand 3	B	62	75	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	11	first strand
Strand 2	B	102	104	parallel
Strand 3	B	85	90	anti-parallel
Strand 4	B	33	38	anti-parallel
Strand 5	B	45	48	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	114	118	first strand
Strand 2	B	129	139	anti-parallel
Strand 3	B	173	182	anti-parallel
Strand 4	B	159	160	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	154	155	first strand
Strand 2	B	145	150	anti-parallel
Strand 3	B	191	197	anti-parallel
Strand 4	B	206	210	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	426	427	first strand
Strand 2	E	503	504	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	496	498	first strand
Strand 2	E	536	538	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	513	516	first strand
Strand 2	E	506	509	anti-parallel
Strand 3	E	552	555	anti-parallel
Strand 4	E	561	564	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	628	633	first strand
Strand 2	E	636	641	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	107	111	parallel
Strand 3	C	88	95	anti-parallel
Strand 4	C	33	39	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	107	111	parallel
Strand 3	C	88	95	anti-parallel
Strand 4	C	100	102	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	18	20	first strand
Strand 2	C	79	82	anti-parallel
Strand 3	C	67	70	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	51	51	first strand
Strand 2	C	58	59	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	120	124	first strand
Strand 2	C	137	145	anti-parallel
Strand 3	C	176	183	anti-parallel
Strand 4	C	163	165	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	120	124	first strand
Strand 2	C	137	145	anti-parallel
Strand 3	C	176	183	anti-parallel
Strand 4	C	169	170	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	151	154	first strand
Strand 2	C	194	200	anti-parallel
Strand 3	C	205	211	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	5	first strand
Strand 2	D	19	25	anti-parallel
Strand 3	D	70	75	anti-parallel
Strand 4	D	62	67	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	13	first strand
Strand 2	D	102	106	parallel
Strand 3	D	85	90	anti-parallel
Strand 4	D	33	38	anti-parallel
Strand 5	D	45	48	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	13	first strand
Strand 2	D	102	106	parallel
Strand 3	D	85	90	anti-parallel
Strand 4	D	97	98	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	114	118	first strand
Strand 2	D	129	139	anti-parallel
Strand 3	D	173	182	anti-parallel
Strand 4	D	159	160	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	154	155	first strand
Strand 2	D	145	150	anti-parallel
Strand 3	D	191	197	anti-parallel
Strand 4	D	206	210	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	426	427	first strand
Strand 2	F	503	504	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	496	498	first strand
Strand 2	F	536	538	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	513	516	first strand
Strand 2	F	506	509	anti-parallel
Strand 3	F	552	555	anti-parallel
Strand 4	F	561	564	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	625	633	first strand
Strand 2	F	636	644	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7JTF

Analysis of interatomic Contacts of Structural Units in PDB entry:
7JTF