Analysis of interatomic Contacts of Structural Units in PDB entry:
7JTI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7JTI entry

There are 6 chains in PDB entry 7JTI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
L	GLN 1	SER 210
H	GLN 1	PRO 221
A	VAL 6	HIS 308
B	PHE 1	THR 309
C	SER 2	ARG 301
D	PRO 4	THR 299

There are 61 helices in PDB entry 7JTI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	L	30	34	Right-handed 310
Helix 2	AA2	L	81	85	Right-handed 310
Helix 3	AA3	L	124	130	Right-handed alpha
Helix 4	AA4	L	185	191	Right-handed alpha
Helix 5	AA5	H	86	90	Right-handed 310
Helix 6	AA6	H	209	212	Right-handed 310
Helix 7	AA7	A	7	18	Right-handed alpha
Helix 8	AA8	A	20	22	Right-handed 310
Helix 9	AA9	A	23	32	Right-handed alpha
Helix 10	AB1	A	41	58	Right-handed alpha
Helix 11	AB2	A	86	90	Right-handed 310
Helix 12	AB3	A	93	105	Right-handed alpha
Helix 13	AB4	A	124	139	Right-handed alpha
Helix 14	AB5	A	141	146	Right-handed 310
Helix 15	AB6	A	163	169	Right-handed alpha
Helix 16	AB7	A	170	172	Right-handed 310
Helix 17	AB8	A	221	234	Right-handed alpha
Helix 18	AB9	A	258	262	Right-handed 310
Helix 19	AC1	A	293	295	Right-handed 310
Helix 20	AC2	A	296	307	Right-handed alpha
Helix 21	AC3	B	3	17	Right-handed alpha
Helix 22	AC4	B	19	23	Right-handed 310
Helix 23	AC5	B	25	36	Right-handed alpha
Helix 24	AC6	B	36	41	Right-handed alpha
Helix 25	AC7	B	44	61	Right-handed alpha
Helix 26	AC8	B	85	95	Right-handed alpha
Helix 27	AC9	B	116	124	Right-handed alpha
Helix 28	AD1	B	125	127	Right-handed 310
Helix 29	AD2	B	131	136	Right-handed alpha
Helix 30	AD3	B	155	162	Right-handed alpha
Helix 31	AD4	B	213	225	Right-handed alpha
Helix 32	AD5	B	282	284	Right-handed 310
Helix 33	AD6	B	285	309	Right-handed alpha
Helix 34	AD7	C	3	18	Right-handed alpha
Helix 35	AD8	C	20	22	Right-handed 310
Helix 36	AD9	C	23	37	Right-handed alpha
Helix 37	AE1	C	38	42	Right-handed 310
Helix 38	AE2	C	45	62	Right-handed alpha
Helix 39	AE3	C	72	74	Right-handed 310
Helix 40	AE4	C	83	87	Right-handed 310
Helix 41	AE5	C	90	92	Right-handed 310
Helix 42	AE6	C	93	100	Right-handed alpha
Helix 43	AE7	C	120	135	Right-handed alpha
Helix 44	AE8	C	159	166	Right-handed alpha
Helix 45	AE9	C	216	229	Right-handed alpha
Helix 46	AF1	C	289	300	Right-handed alpha
Helix 47	AF2	D	5	18	Right-handed alpha
Helix 48	AF3	D	20	24	Right-handed 310
Helix 49	AF4	D	26	33	Right-handed alpha
Helix 50	AF5	D	37	41	Right-handed 310
Helix 51	AF6	D	43	60	Right-handed alpha
Helix 52	AF7	D	80	84	Right-handed 310
Helix 53	AF8	D	87	97	Right-handed alpha
Helix 54	AF9	D	118	126	Right-handed alpha
Helix 55	AG1	D	127	129	Right-handed 310
Helix 56	AG2	D	133	138	Right-handed alpha
Helix 57	AG3	D	154	156	Right-handed 310
Helix 58	AG4	D	157	164	Right-handed alpha
Helix 59	AG5	D	215	227	Right-handed alpha
Helix 60	AG6	D	284	286	Right-handed 310
Helix 61	AG7	D	287	299	Right-handed alpha

There are 25 sheets in PDB entry 7JTI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	6	first strand
Strand 2	L	17	24	anti-parallel
Strand 3	L	72	78	anti-parallel
Strand 4	L	64	69	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	12	first strand
Strand 2	L	104	108	parallel
Strand 3	L	86	93	anti-parallel
Strand 4	L	36	41	anti-parallel
Strand 5	L	45	51	anti-parallel
Strand 6	L	55	56	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	12	first strand
Strand 2	L	104	108	parallel
Strand 3	L	86	93	anti-parallel
Strand 4	L	98	100	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	117	121	first strand
Strand 2	L	132	142	anti-parallel
Strand 3	L	175	184	anti-parallel
Strand 4	L	162	164	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	117	121	first strand
Strand 2	L	132	142	anti-parallel
Strand 3	L	175	184	anti-parallel
Strand 4	L	168	169	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	156	157	first strand
Strand 2	L	148	153	anti-parallel
Strand 3	L	194	200	anti-parallel
Strand 4	L	203	209	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	67	72	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	116	120	parallel
Strand 3	H	91	99	anti-parallel
Strand 4	H	33	39	anti-parallel
Strand 5	H	46	51	anti-parallel
Strand 6	H	57	59	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	116	120	parallel
Strand 3	H	91	99	anti-parallel
Strand 4	H	108	112	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	129	133	first strand
Strand 2	H	144	154	anti-parallel
Strand 3	H	184	193	anti-parallel
Strand 4	H	172	174	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	129	133	first strand
Strand 2	H	144	154	anti-parallel
Strand 3	H	184	193	anti-parallel
Strand 4	H	178	179	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	160	163	first strand
Strand 2	H	202	208	anti-parallel
Strand 3	H	213	219	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	63	66	first strand
Strand 2	A	264	269	anti-parallel
Strand 3	A	251	255	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	106	110	first strand
Strand 2	A	114	118	anti-parallel
Strand 3	A	148	152	parallel
Strand 4	A	211	216	parallel
Strand 5	A	238	241	parallel
Strand 6	A	290	291	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	193	196	first strand
Strand 2	A	180	186	anti-parallel
Strand 3	A	271	275	anti-parallel
Strand 4	A	280	281	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	69	first strand
Strand 2	B	252	261	anti-parallel
Strand 3	B	171	177	anti-parallel
Strand 4	B	182	187	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	69	first strand
Strand 2	B	252	261	anti-parallel
Strand 3	B	241	246	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	102	first strand
Strand 2	B	106	111	anti-parallel
Strand 3	B	140	144	parallel
Strand 4	B	203	207	parallel
Strand 5	B	228	232	parallel
Strand 6	B	279	280	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	113	114	first strand
Strand 2	B	150	151	parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	67	70	first strand
Strand 2	C	256	261	anti-parallel
Strand 3	C	246	250	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	101	106	first strand
Strand 2	C	110	115	anti-parallel
Strand 3	C	144	148	parallel
Strand 4	C	206	211	parallel
Strand 5	C	233	236	parallel
Strand 6	C	283	284	parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	188	191	first strand
Strand 2	C	175	181	anti-parallel
Strand 3	C	263	267	anti-parallel
Strand 4	C	273	274	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	65	68	first strand
Strand 2	D	254	259	anti-parallel
Strand 3	D	244	248	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	99	104	first strand
Strand 2	D	108	113	anti-parallel
Strand 3	D	142	146	parallel
Strand 4	D	204	209	parallel
Strand 5	D	230	234	parallel
Strand 6	D	281	282	parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	184	189	first strand
Strand 2	D	173	179	anti-parallel
Strand 3	D	261	263	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7JTI

Analysis of interatomic Contacts of Structural Units in PDB entry:
7JTI