Analysis of interatomic Contacts of Structural Units in PDB entry:
7JTN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7JTN entry

There are 14 chains in PDB entry 7JTN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 9	LEU 739
B	A 5	A 8
B	A 10	G 14
B	A 16	A 16
B	A 19	G 20
B	A 22	A 22
B	G 24	C 25
C	GLN 9	LEU 739
D	A 5	A 8
D	A 10	G 14
D	A 16	A 16
D	A 19	G 20
D	A 22	A 22
D	G 24	C 25

There are 39 helices in PDB entry 7JTN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	28	30	Right-handed 310
Helix 2	AA2	A	201	211	Right-handed alpha
Helix 3	AA3	A	254	258	Right-handed 310
Helix 4	AA4	A	261	277	Right-handed alpha
Helix 5	AA5	A	306	315	Right-handed alpha
Helix 6	AA6	A	330	342	Right-handed alpha
Helix 7	AA7	A	351	353	Right-handed 310
Helix 8	AA8	A	373	384	Right-handed alpha
Helix 9	AA9	A	394	396	Right-handed 310
Helix 10	AB1	A	410	418	Right-handed alpha
Helix 11	AB2	A	432	445	Right-handed alpha
Helix 12	AB3	A	446	448	Right-handed 310
Helix 13	AB4	A	463	468	Right-handed alpha
Helix 14	AB5	A	499	503	Right-handed 310
Helix 15	AB6	A	575	582	Right-handed alpha
Helix 16	AB7	A	589	598	Right-handed alpha
Helix 17	AB8	A	627	634	Right-handed alpha
Helix 18	AB9	A	635	638	Right-handed 310
Helix 19	AC1	A	646	650	Right-handed 310
Helix 20	AC2	A	723	731	Right-handed alpha
Helix 21	AC3	C	201	211	Right-handed alpha
Helix 22	AC4	C	254	258	Right-handed 310
Helix 23	AC5	C	261	277	Right-handed alpha
Helix 24	AC6	C	306	315	Right-handed alpha
Helix 25	AC7	C	330	342	Right-handed alpha
Helix 26	AC8	C	351	353	Right-handed 310
Helix 27	AC9	C	373	384	Right-handed alpha
Helix 28	AD1	C	394	396	Right-handed 310
Helix 29	AD2	C	410	418	Right-handed alpha
Helix 30	AD3	C	432	445	Right-handed alpha
Helix 31	AD4	C	446	448	Right-handed 310
Helix 32	AD5	C	463	468	Right-handed alpha
Helix 33	AD6	C	499	503	Right-handed 310
Helix 34	AD7	C	575	582	Right-handed alpha
Helix 35	AD8	C	589	598	Right-handed alpha
Helix 36	AD9	C	627	634	Right-handed alpha
Helix 37	AE1	C	635	638	Right-handed 310
Helix 38	AE2	C	646	650	Right-handed 310
Helix 39	AE3	C	723	731	Right-handed alpha

There are 20 sheets in PDB entry 7JTN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	19	20	first strand
Strand 2	A	71	75	parallel
Strand 3	A	41	44	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	27	first strand
Strand 2	A	32	36	anti-parallel
Strand 3	A	48	50	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	90	first strand
Strand 2	A	101	106	anti-parallel
Strand 3	A	117	119	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	111	113	first strand
Strand 2	A	132	134	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	149	152	first strand
Strand 2	A	161	166	anti-parallel
Strand 3	A	177	179	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	171	173	first strand
Strand 2	A	192	194	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	293	297	first strand
Strand 2	A	283	289	anti-parallel
Strand 3	A	243	251	parallel
Strand 4	A	355	363	parallel
Strand 5	A	398	405	parallel
Strand 6	A	427	430	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	484	489	first strand
Strand 2	A	471	476	anti-parallel
Strand 3	A	512	516	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	495	498	first strand
Strand 2	A	553	557	anti-parallel
Strand 3	A	525	530	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	614	621	first strand
Strand 2	A	604	611	anti-parallel
Strand 3	A	677	682	anti-parallel
Strand 4	A	685	695	anti-parallel
Strand 5	A	714	719	anti-parallel
Strand 6	A	655	659	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	19	20	first strand
Strand 2	C	71	75	parallel
Strand 3	C	41	44	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	23	27	first strand
Strand 2	C	32	36	anti-parallel
Strand 3	C	48	50	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	87	90	first strand
Strand 2	C	101	106	anti-parallel
Strand 3	C	117	119	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	111	113	first strand
Strand 2	C	132	134	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	149	152	first strand
Strand 2	C	161	166	anti-parallel
Strand 3	C	177	179	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	171	173	first strand
Strand 2	C	192	194	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	293	297	first strand
Strand 2	C	283	289	anti-parallel
Strand 3	C	243	251	parallel
Strand 4	C	355	363	parallel
Strand 5	C	398	405	parallel
Strand 6	C	427	430	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	484	489	first strand
Strand 2	C	471	476	anti-parallel
Strand 3	C	512	516	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	495	498	first strand
Strand 2	C	553	557	anti-parallel
Strand 3	C	525	530	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	614	621	first strand
Strand 2	C	604	611	anti-parallel
Strand 3	C	677	682	anti-parallel
Strand 4	C	685	695	anti-parallel
Strand 5	C	714	719	anti-parallel
Strand 6	C	655	659	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7JTN

Analysis of interatomic Contacts of Structural Units in PDB entry:
7JTN