Analysis of interatomic Contacts of Structural Units in PDB entry:
7JTR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7JTR entry

There are 8 chains in PDB entry 7JTR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 1	THR 369
B	GLN 1	LYS 242
C	LYS 1	THR 369
D	GLN 1	LYS 242
E	LYS 1	THR 369
F	GLN 1	ARG 243
G	LYS 1	THR 369
H	GLN 1	ARG 243

There are 85 helices in PDB entry 7JTR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	32	Right-handed alpha
Helix 2	AA2	A	42	53	Right-handed alpha
Helix 3	AA3	A	66	73	Right-handed alpha
Helix 4	AA4	A	82	87	Right-handed alpha
Helix 5	AA5	A	90	97	Right-handed alpha
Helix 6	AA6	A	131	141	Right-handed alpha
Helix 7	AA7	A	153	164	Right-handed alpha
Helix 8	AA8	A	185	201	Right-handed alpha
Helix 9	AA9	A	209	219	Right-handed alpha
Helix 10	AB1	A	228	230	Right-handed 310
Helix 11	AB2	A	231	238	Right-handed alpha
Helix 12	AB3	A	272	283	Right-handed alpha
Helix 13	AB4	A	286	297	Right-handed alpha
Helix 14	AB5	A	304	312	Right-handed alpha
Helix 15	AB6	A	314	327	Right-handed alpha
Helix 16	AB7	A	335	353	Right-handed alpha
Helix 17	AB8	A	356	369	Right-handed alpha
Helix 18	AB9	B	28	32	Right-handed 310
Helix 19	AC1	B	62	65	Right-handed 310
Helix 20	AC2	B	87	91	Right-handed 310
Helix 21	AC3	B	214	218	Right-handed 310
Helix 22	AC4	C	16	32	Right-handed alpha
Helix 23	AC5	C	42	53	Right-handed alpha
Helix 24	AC6	C	66	73	Right-handed alpha
Helix 25	AC7	C	82	87	Right-handed alpha
Helix 26	AC8	C	90	97	Right-handed alpha
Helix 27	AC9	C	131	141	Right-handed alpha
Helix 28	AD1	C	153	164	Right-handed alpha
Helix 29	AD2	C	185	201	Right-handed alpha
Helix 30	AD3	C	209	219	Right-handed alpha
Helix 31	AD4	C	228	230	Right-handed 310
Helix 32	AD5	C	231	238	Right-handed alpha
Helix 33	AD6	C	272	283	Right-handed alpha
Helix 34	AD7	C	286	297	Right-handed alpha
Helix 35	AD8	C	304	312	Right-handed alpha
Helix 36	AD9	C	314	327	Right-handed alpha
Helix 37	AE1	C	335	353	Right-handed alpha
Helix 38	AE2	C	356	369	Right-handed alpha
Helix 39	AE3	D	28	32	Right-handed 310
Helix 40	AE4	D	62	65	Right-handed 310
Helix 41	AE5	D	87	91	Right-handed 310
Helix 42	AE6	D	214	218	Right-handed 310
Helix 43	AE7	E	16	32	Right-handed alpha
Helix 44	AE8	E	42	53	Right-handed alpha
Helix 45	AE9	E	66	73	Right-handed alpha
Helix 46	AF1	E	82	87	Right-handed alpha
Helix 47	AF2	E	90	97	Right-handed alpha
Helix 48	AF3	E	128	130	Right-handed 310
Helix 49	AF4	E	131	141	Right-handed alpha
Helix 50	AF5	E	153	164	Right-handed alpha
Helix 51	AF6	E	185	201	Right-handed alpha
Helix 52	AF7	E	209	219	Right-handed alpha
Helix 53	AF8	E	228	230	Right-handed 310
Helix 54	AF9	E	231	238	Right-handed alpha
Helix 55	AG1	E	272	283	Right-handed alpha
Helix 56	AG2	E	286	297	Right-handed alpha
Helix 57	AG3	E	304	312	Right-handed alpha
Helix 58	AG4	E	314	327	Right-handed alpha
Helix 59	AG5	E	335	353	Right-handed alpha
Helix 60	AG6	E	356	369	Right-handed alpha
Helix 61	AG7	F	28	32	Right-handed 310
Helix 62	AG8	F	62	65	Right-handed 310
Helix 63	AG9	F	74	76	Right-handed 310
Helix 64	AH1	F	87	91	Right-handed 310
Helix 65	AH2	F	214	218	Right-handed 310
Helix 66	AH3	G	16	32	Right-handed alpha
Helix 67	AH4	G	42	53	Right-handed alpha
Helix 68	AH5	G	66	73	Right-handed alpha
Helix 69	AH6	G	82	87	Right-handed alpha
Helix 70	AH7	G	90	97	Right-handed alpha
Helix 71	AH8	G	131	141	Right-handed alpha
Helix 72	AH9	G	153	164	Right-handed alpha
Helix 73	AI1	G	185	201	Right-handed alpha
Helix 74	AI2	G	209	219	Right-handed alpha
Helix 75	AI3	G	228	230	Right-handed 310
Helix 76	AI4	G	231	238	Right-handed alpha
Helix 77	AI5	G	272	283	Right-handed alpha
Helix 78	AI6	G	286	297	Right-handed alpha
Helix 79	AI7	G	304	312	Right-handed alpha
Helix 80	AI8	G	314	327	Right-handed alpha
Helix 81	AI9	G	335	353	Right-handed alpha
Helix 82	AJ1	G	356	369	Right-handed alpha
Helix 83	AJ2	H	28	32	Right-handed 310
Helix 84	AJ3	H	87	91	Right-handed 310
Helix 85	AJ4	H	214	218	Right-handed 310

There are 39 sheets in PDB entry 7JTR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	38	first strand
Strand 2	A	6	10	parallel
Strand 3	A	59	63	parallel
Strand 4	A	258	266	anti-parallel
Strand 5	A	106	111	anti-parallel
Strand 6	A	301	302	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	38	first strand
Strand 2	A	6	10	parallel
Strand 3	A	59	63	parallel
Strand 4	A	258	266	anti-parallel
Strand 5	A	328	329	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	99	first strand
Strand 2	A	102	103	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	145	147	first strand
Strand 2	A	222	227	parallel
Strand 3	A	114	118	anti-parallel
Strand 4	A	242	245	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	167	172	first strand
Strand 2	A	175	182	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	5	first strand
Strand 2	B	18	25	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	68	73	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	12	first strand
Strand 2	B	108	112	parallel
Strand 3	B	92	98	anti-parallel
Strand 4	B	34	39	anti-parallel
Strand 5	B	45	51	anti-parallel
Strand 6	B	58	60	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	12	first strand
Strand 2	B	108	112	parallel
Strand 3	B	92	98	anti-parallel
Strand 4	B	103	104	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	133	136	first strand
Strand 2	B	148	154	anti-parallel
Strand 3	B	205	210	anti-parallel
Strand 4	B	197	202	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	139	143	first strand
Strand 2	B	237	242	parallel
Strand 3	B	219	225	anti-parallel
Strand 4	B	168	173	anti-parallel
Strand 5	B	180	184	anti-parallel
Strand 6	B	188	189	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	38	first strand
Strand 2	C	7	10	parallel
Strand 3	C	59	63	parallel
Strand 4	C	260	266	anti-parallel
Strand 5	C	106	111	anti-parallel
Strand 6	C	301	302	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	98	99	first strand
Strand 2	C	102	103	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	145	147	first strand
Strand 2	C	222	227	parallel
Strand 3	C	114	118	anti-parallel
Strand 4	C	242	245	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	167	172	first strand
Strand 2	C	175	182	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	5	first strand
Strand 2	D	18	25	anti-parallel
Strand 3	D	78	83	anti-parallel
Strand 4	D	68	73	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	12	first strand
Strand 2	D	108	112	parallel
Strand 3	D	92	98	anti-parallel
Strand 4	D	34	39	anti-parallel
Strand 5	D	45	51	anti-parallel
Strand 6	D	58	60	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	12	first strand
Strand 2	D	108	112	parallel
Strand 3	D	92	98	anti-parallel
Strand 4	D	103	104	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	133	136	first strand
Strand 2	D	148	154	anti-parallel
Strand 3	D	205	210	anti-parallel
Strand 4	D	197	202	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	139	142	first strand
Strand 2	D	237	241	parallel
Strand 3	D	219	225	anti-parallel
Strand 4	D	168	173	anti-parallel
Strand 5	D	180	184	anti-parallel
Strand 6	D	188	189	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	35	38	first strand
Strand 2	E	7	10	parallel
Strand 3	E	59	63	parallel
Strand 4	E	258	266	anti-parallel
Strand 5	E	106	111	anti-parallel
Strand 6	E	301	302	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	35	38	first strand
Strand 2	E	7	10	parallel
Strand 3	E	59	63	parallel
Strand 4	E	258	266	anti-parallel
Strand 5	E	328	329	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	98	99	first strand
Strand 2	E	102	103	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	145	147	first strand
Strand 2	E	222	227	parallel
Strand 3	E	114	118	anti-parallel
Strand 4	E	242	245	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	167	172	first strand
Strand 2	E	175	182	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	5	first strand
Strand 2	F	18	25	anti-parallel
Strand 3	F	78	83	anti-parallel
Strand 4	F	68	73	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	9	12	first strand
Strand 2	F	108	112	parallel
Strand 3	F	92	98	anti-parallel
Strand 4	F	34	39	anti-parallel
Strand 5	F	45	51	anti-parallel
Strand 6	F	58	60	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	9	12	first strand
Strand 2	F	108	112	parallel
Strand 3	F	92	98	anti-parallel
Strand 4	F	103	104	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	133	136	first strand
Strand 2	F	148	154	anti-parallel
Strand 3	F	205	210	anti-parallel
Strand 4	F	197	202	anti-parallel

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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	139	143	first strand
Strand 2	F	237	242	parallel
Strand 3	F	219	225	anti-parallel
Strand 4	F	168	173	anti-parallel
Strand 5	F	180	184	anti-parallel
Strand 6	F	188	189	anti-parallel

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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	34	38	first strand
Strand 2	G	6	10	parallel
Strand 3	G	59	63	parallel
Strand 4	G	258	266	anti-parallel
Strand 5	G	106	111	anti-parallel
Strand 6	G	301	302	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	34	38	first strand
Strand 2	G	6	10	parallel
Strand 3	G	59	63	parallel
Strand 4	G	258	266	anti-parallel
Strand 5	G	328	329	parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	98	99	first strand
Strand 2	G	102	103	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	145	147	first strand
Strand 2	G	222	227	parallel
Strand 3	G	114	118	anti-parallel
Strand 4	G	242	245	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	167	172	first strand
Strand 2	G	175	182	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	5	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 6 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	9	12	first strand
Strand 2	H	108	112	parallel
Strand 3	H	92	98	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	45	51	anti-parallel
Strand 6	H	58	60	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	9	12	first strand
Strand 2	H	108	112	parallel
Strand 3	H	92	98	anti-parallel
Strand 4	H	103	104	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	133	136	first strand
Strand 2	H	148	154	anti-parallel
Strand 3	H	205	210	anti-parallel
Strand 4	H	197	202	anti-parallel

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There are 6 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	139	142	first strand
Strand 2	H	237	241	parallel
Strand 3	H	219	225	anti-parallel
Strand 4	H	168	173	anti-parallel
Strand 5	H	180	184	anti-parallel
Strand 6	H	188	189	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7JTR

Analysis of interatomic Contacts of Structural Units in PDB entry:
7JTR