Analysis of interatomic Contacts of Structural Units in PDB entry:
7JTS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7JTS entry

There are 13 chains in PDB entry 7JTS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
E	ASP 116	GLN 172
F	GLY 139	MET 186
a	LYS 7	SER 90
b	LYS 7	SER 90
c	LYS 7	SER 90
d	LYS 7	SER 90
e	LYS 7	SER 90
f	LYS 7	SER 90
g	LYS 7	SER 90
h	LYS 7	SER 90
m	GLN 31	ILE 214
s	GLU 344	PHE 650
t	LEU 8	THR 150

There are 35 helices in PDB entry 7JTS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	E	153	172	Right-handed alpha
Helix 2	AA2	F	154	186	Right-handed alpha
Helix 3	AA3	a	16	31	Right-handed alpha
Helix 4	AA4	a	36	52	Right-handed alpha
Helix 5	AA5	b	16	34	Right-handed alpha
Helix 6	AA6	b	36	51	Right-handed alpha
Helix 7	AA7	c	16	34	Right-handed alpha
Helix 8	AA8	c	36	51	Right-handed alpha
Helix 9	AA9	d	16	34	Right-handed alpha
Helix 10	AB1	d	36	52	Right-handed alpha
Helix 11	AB2	e	16	34	Right-handed alpha
Helix 12	AB3	e	36	52	Right-handed alpha
Helix 13	AB4	f	16	33	Right-handed alpha
Helix 14	AB5	f	36	52	Right-handed alpha
Helix 15	AB6	g	16	33	Right-handed alpha
Helix 16	AB7	g	36	51	Right-handed alpha
Helix 17	AB8	h	16	34	Right-handed alpha
Helix 18	AB9	h	36	52	Right-handed alpha
Helix 19	AC1	s	399	461	Right-handed alpha
Helix 20	AC2	s	464	490	Right-handed alpha
Helix 21	AC3	s	495	537	Right-handed alpha
Helix 22	AC4	s	555	572	Right-handed alpha
Helix 23	AC5	s	578	593	Right-handed alpha
Helix 24	AC6	s	598	616	Right-handed alpha
Helix 25	AC7	s	619	623	Right-handed 310
Helix 26	AC8	s	624	639	Right-handed alpha
Helix 27	AC9	s	646	650	Right-handed 310
Helix 28	AD1	t	9	24	Right-handed alpha
Helix 29	AD2	t	35	43	Right-handed alpha
Helix 30	AD3	t	48	58	Right-handed alpha
Helix 31	AD4	t	69	82	Right-handed alpha
Helix 32	AD5	t	85	95	Right-handed alpha
Helix 33	AD6	t	105	116	Right-handed alpha
Helix 34	AD7	t	121	132	Right-handed alpha
Helix 35	AD8	t	141	149	Right-handed alpha

There are 12 sheets in PDB entry 7JTS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	117	119	first strand
Strand 2	f	57	68	anti-parallel
Strand 3	e	57	70	anti-parallel
Strand 4	f	84	88	first strand
Strand 5	f	75	79	anti-parallel
Strand 6	f	9	12	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	9	14	first strand
Strand 2	e	75	80	anti-parallel
Strand 3	e	83	88	anti-parallel
Strand 4	e	57	70	anti-parallel
Strand 5	f	57	68	anti-parallel
Strand 6	s	349	354	first strand

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	142	144	first strand
Strand 2	b	57	68	anti-parallel
Strand 3	a	57	65	anti-parallel
Strand 4	a	83	88	anti-parallel
Strand 5	a	75	80	anti-parallel
Strand 6	a	8	13	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	142	144	first strand
Strand 2	b	57	68	anti-parallel
Strand 3	b	83	88	anti-parallel
Strand 4	b	74	80	anti-parallel
Strand 5	b	9	15	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	140	145	first strand
Strand 2	c	63	70	anti-parallel
Strand 3	d	57	63	anti-parallel
Strand 4	d	83	88	anti-parallel
Strand 5	d	74	80	anti-parallel
Strand 6	d	8	10	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	140	145	first strand
Strand 2	c	63	70	anti-parallel
Strand 3	d	57	63	anti-parallel
Strand 4	d	83	88	anti-parallel
Strand 5	d	74	80	anti-parallel
Strand 6	d	14	15	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	70	71	first strand
Strand 2	s	366	367	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	10	15	first strand
Strand 2	c	74	80	anti-parallel
Strand 3	c	83	89	anti-parallel
Strand 4	c	56	61	anti-parallel
Strand 5	d	66	71	anti-parallel
Strand 6	s	358	362	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	8	14	first strand
Strand 2	g	75	80	anti-parallel
Strand 3	g	83	88	anti-parallel
Strand 4	g	57	65	anti-parallel
Strand 5	h	57	64	anti-parallel
Strand 6	h	83	88	anti-parallel
Strand 7	h	76	80	anti-parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	m	46	52	first strand
Strand 2	m	55	64	anti-parallel
Strand 3	m	68	75	anti-parallel
Strand 4	m	79	86	anti-parallel
Strand 5	m	97	101	anti-parallel
Strand 6	m	108	113	anti-parallel
Strand 7	m	119	124	anti-parallel
Strand 8	m	130	136	anti-parallel
Strand 9	m	152	155	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	m	161	166	first strand
Strand 2	m	172	177	anti-parallel
Strand 3	m	185	190	anti-parallel
Strand 4	m	195	200	anti-parallel
Strand 5	m	208	212	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	t	30	32	first strand
Strand 2	t	66	68	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7JTS

Analysis of interatomic Contacts of Structural Units in PDB entry:
7JTS