Analysis of interatomic Contacts of Structural Units in PDB entry:
7JU0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7JU0 entry

There are 2 chains in PDB entry 7JU0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 2	HIS 528
B	SER 2	GLY 529

There are 46 helices in PDB entry 7JU0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	14	28	Right-handed alpha
Helix 2	AA2	A	53	59	Right-handed alpha
Helix 3	AA3	A	59	64	Right-handed alpha
Helix 4	AA4	A	66	74	Right-handed alpha
Helix 5	AA5	A	122	132	Right-handed alpha
Helix 6	AA6	A	138	144	Right-handed alpha
Helix 7	AA7	A	145	152	Right-handed alpha
Helix 8	AA8	A	172	188	Right-handed alpha
Helix 9	AA9	A	228	232	Right-handed 310
Helix 10	AB1	A	263	268	Right-handed alpha
Helix 11	AB2	A	304	316	Right-handed alpha
Helix 12	AB3	A	347	349	Right-handed 310
Helix 13	AB4	A	359	374	Right-handed alpha
Helix 14	AB5	A	381	409	Right-handed alpha
Helix 15	AB6	A	415	422	Right-handed alpha
Helix 16	AB7	A	427	439	Right-handed alpha
Helix 17	AB8	A	450	457	Right-handed alpha
Helix 18	AB9	A	457	463	Right-handed alpha
Helix 19	AC1	A	467	479	Right-handed alpha
Helix 20	AC2	A	486	492	Right-handed 310
Helix 21	AC3	A	494	499	Right-handed alpha
Helix 22	AC4	A	499	517	Right-handed alpha
Helix 23	AC5	A	519	528	Right-handed alpha
Helix 24	AC6	B	14	28	Right-handed alpha
Helix 25	AC7	B	53	59	Right-handed alpha
Helix 26	AC8	B	59	64	Right-handed alpha
Helix 27	AC9	B	66	74	Right-handed alpha
Helix 28	AD1	B	122	132	Right-handed alpha
Helix 29	AD2	B	138	144	Right-handed alpha
Helix 30	AD3	B	145	152	Right-handed alpha
Helix 31	AD4	B	172	188	Right-handed alpha
Helix 32	AD5	B	228	232	Right-handed 310
Helix 33	AD6	B	263	268	Right-handed alpha
Helix 34	AD7	B	304	317	Right-handed alpha
Helix 35	AD8	B	347	349	Right-handed 310
Helix 36	AD9	B	359	374	Right-handed alpha
Helix 37	AE1	B	381	409	Right-handed alpha
Helix 38	AE2	B	415	422	Right-handed alpha
Helix 39	AE3	B	427	439	Right-handed alpha
Helix 40	AE4	B	450	456	Right-handed alpha
Helix 41	AE5	B	457	463	Right-handed alpha
Helix 42	AE6	B	467	479	Right-handed alpha
Helix 43	AE7	B	488	491	Right-handed 310
Helix 44	AE8	B	492	499	Right-handed alpha
Helix 45	AE9	B	499	517	Right-handed alpha
Helix 46	AF1	B	519	528	Right-handed alpha

There are 13 sheets in PDB entry 7JU0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	191	194	first strand
Strand 2	A	33	38	parallel
Strand 3	A	7	11	parallel
Strand 4	A	223	226	parallel
Strand 5	A	343	345	parallel
Strand 6	A	339	340	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	50	first strand
Strand 2	A	168	171	anti-parallel
Strand 3	A	77	79	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	106	110	first strand
Strand 2	A	81	85	anti-parallel
Strand 3	A	273	278	parallel
Strand 4	A	281	287	anti-parallel
Strand 5	A	291	298	anti-parallel
Strand 6	A	254	261	anti-parallel
Strand 7	A	326	329	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	116	117	first strand
Strand 2	A	120	121	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	197	202	first strand
Strand 2	A	208	213	anti-parallel
Strand 3	A	218	220	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	243	245	first strand
Strand 2	A	333	335	anti-parallel
Strand 3	A	351	352	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	191	194	first strand
Strand 2	B	33	38	parallel
Strand 3	B	7	11	parallel
Strand 4	B	223	226	parallel
Strand 5	B	343	345	parallel
Strand 6	B	339	340	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	50	first strand
Strand 2	B	168	171	anti-parallel
Strand 3	B	77	79	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	106	110	first strand
Strand 2	B	81	85	anti-parallel
Strand 3	B	273	277	parallel
Strand 4	B	281	287	anti-parallel
Strand 5	B	291	298	anti-parallel
Strand 6	B	254	261	anti-parallel
Strand 7	B	326	329	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	99	100	first strand
Strand 2	B	103	104	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	117	first strand
Strand 2	B	120	121	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	197	202	first strand
Strand 2	B	208	213	anti-parallel
Strand 3	B	218	220	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	243	245	first strand
Strand 2	B	333	335	anti-parallel
Strand 3	B	351	352	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7JU0

Analysis of interatomic Contacts of Structural Units in PDB entry:
7JU0